Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22850 118 / 7e-33 bZIP ATBZIP6 basic leucine-zipper 6 (.1.2) AT3G49760 108 / 1e-29 bZIP ATBZIP5 basic leucine-zipper 5 (.1) AT4G37730 99 / 9e-25 bZIP ATBZIP7 basic leucine-zipper 7 (.1) AT1G75390 81 / 8e-19 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT2G18160 79 / 4e-18 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT4G34590 75 / 6e-17 bZIP ATB2, ATBZIP11, BZIP11, GBF6 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) AT1G13600 75 / 1e-16 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT2G04038 73 / 4e-16 bZIP ATBZIP48 basic leucine-zipper 48 (.1) AT3G30530 73 / 5e-16 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT5G15830 72 / 2e-15 bZIP ATBZIP3 basic leucine-zipper 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G007100 [exp] 265 / 7e-91 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1) Potri.014G013400 [exp] 91 / 4e-23 AT1G59530 77 / 8e-19 basic leucine-zipper 4 (.1) Potri.002G115900 [exp] 84 / 2e-20 AT1G59530 76 / 5e-18 basic leucine-zipper 4 (.1) Potri.008G113400 [exp] 83 / 2e-19 AT1G13600 139 / 2e-41 basic leucine-zipper 58 (.1) Potri.010G135200 [exp] 82 / 4e-19 AT3G30530 131 / 2e-38 basic leucine-zipper 42 (.1) Potri.009G119700 [exp] 79 / 2e-18 AT4G34590 154 / 9e-49 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) Potri.004G158200 [exp] 79 / 2e-18 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2) Potri.004G111100 [exp] 79 / 4e-18 AT3G30530 156 / 9e-49 basic leucine-zipper 42 (.1) Potri.017G106700 [exp] 77 / 2e-17 AT3G30530 169 / 1e-53 basic leucine-zipper 42 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011722 [exp] 159 / 1e-48 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10011557 [exp] 141 / 6e-43 AT3G49760 87 / 9e-23 basic leucine-zipper 5 (.1) Lus10019273 [exp] 128 / 8e-37 AT2G22850 94 / 2e-23 basic leucine-zipper 6 (.1.2) Lus10007726 [exp] 83 / 7e-20 AT3G49760 84 / 3e-21 basic leucine-zipper 5 (.1) Lus10013059 [exp] 83 / 3e-19 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10018662 [exp] 80 / 6e-19 AT3G49760 82 / 2e-20 basic leucine-zipper 5 (.1) Lus10024279 [exp] 80 / 2e-18 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10029101 [exp] 80 / 5e-18 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10040428 [exp] 77 / 3e-17 AT1G75390 148 / 8e-46 basic leucine-zipper 44 (.1.2) Lus10001347 [exp] 76 / 3e-17 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.007G006900.2 pacid=42766487 polypeptide=Potri.007G006900.2.p locus=Potri.007G006900 ID=Potri.007G006900.2.v4.1 annot-version=v4.1 ATGGTGGGTTCCACCAATTTTGCCATAAATATGAGCCCCCTACGCTGCAATTCTTCCGTTTCCTCCTCCTTCCTCCCTCCCTCCCCTCTCTATCGAGCAA TTTCTATAGCCATGCTGTCCACAGTTTCGGCCACTTACCCATTGGTTGAACCGATGCTCGACAACCCATTTCAGTTCTTTGAGAATGGTTTTACGCCTTG GGACTGTTTCGACCCCTTTCCAAGTGCTCCTCAATCACCAAAACCTTTTGGTTCGAGTTCCGGTTCGGATGAGTCCAACCTGTTGGACCAGAACCCTGAC AATTCAAACTCAAACTCCGGCTCCGATGAACCAAACCCTCCGGTTTCGGTCATAGACGAAAGGAAACGTAGGCGGATGGTATCAAACCGGGAGTCGGCAA GGCGGTCTCGGATGCGAAAACAGAAGCACATGGACAACCTAAGGAACCAGGTGAACCGGCTTAGGGTTGAGAACCGTGAACTGACGAACCGGTTGCGGAT TGTTTTGTACCATTGCCACAGTGTACGAACAGAAAACGACTGGCTCCGGTCTGAATATAGTATGCTCCGAAAAAAGCTGTCGGAAACAAGCCAAATCTTG ATGATGAGGCAACTCCAACAATTCACGTCCGCATGGCCATGCAATAATATTATTTCTGCCACCGAATAA
AA sequence Show only first row Show all	>Potri.007G006900.2 pacid=42766487 polypeptide=Potri.007G006900.2.p locus=Potri.007G006900 ID=Potri.007G006900.2.v4.1 annot-version=v4.1 MVGSTNFAINMSPLRCNSSVSSSFLPPSPLYRAISIAMLSTVSATYPLVEPMLDNPFQFFENGFTPWDCFDPFPSAPQSPKPFGSSSGSDESNLLDQNPD NSNSNSGSDEPNPPVSVIDERKRRRMVSNRESARRSRMRKQKHMDNLRNQVNRLRVENRELTNRLRIVLYHCHSVRTENDWLRSEYSMLRKKLSETSQIL MMRQLQQFTSAWPCNNIISATE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22850	bZIP	ATBZIP6	basic leucine-zipper 6 (.1.2)		Potri.007G006900 [exp]	0	1
AT1G77610			EamA-like transporter family p...		Potri.002G084500 [exp]	5.38	0.8722
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G121100 [exp]	8.24	0.8579
AT1G68725		AGP19, ATAGP19	arabinogalactan protein 19 (.1...		Potri.008G111000 [exp]	11.22	0.8551
AT5G40470			RNI-like superfamily protein (...		Potri.017G069800 [exp]	13.78	0.8523
AT2G01290		RPI2	ribose-5-phosphate isomerase 2...		Potri.001G225700 [exp]	14.69	0.8478
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070200 [exp]	16.61	0.8522
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Potri.004G163200 [exp]	19.89	0.8184
AT1G47480			alpha/beta-Hydrolases superfam...		Potri.004G143200 [exp]	20.73	0.8463
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120800 [exp]	22.97	0.8412	FLA14.5
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.008G073300 [exp]	27.71	0.8323

Compare expression of checked genes

Potri.007G006900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.