Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10050 210 / 7e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 208 / 5e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03330 73 / 1e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G17845 72 / 2e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03350 72 / 3e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G55310 70 / 1e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47350 68 / 6e-13 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT3G29250 68 / 7e-13 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G55290 66 / 2e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G47360 66 / 4e-12 ATHSD3 hydroxysteroid dehydrogenase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G086600 [exp] 223 / 4e-71 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G080900 [exp] 204 / 2e-64 AT5G10050 379 / 2e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 71 / 6e-14 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 71 / 7e-14 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G084100 [exp] 67 / 2e-12 AT3G03330 446 / 2e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G022500 [exp] 66 / 2e-12 AT4G05530 373 / 5e-132 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Potri.006G207100 [exp] 66 / 4e-12 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 64 / 8e-12 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 64 / 1e-11 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011729 [exp] 417 / 4e-148 AT5G65205 240 / 1e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004925 [exp] 211 / 3e-67 AT5G10050 410 / 5e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016429 [exp] 187 / 7e-58 AT5G10050 349 / 1e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016430 [exp] 183 / 2e-56 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019683 [exp] 180 / 3e-55 AT5G10050 315 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019684 [exp] 175 / 3e-53 AT5G10050 355 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040878 [exp] 162 / 1e-48 AT5G65205 308 / 9e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 78 / 1e-16 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 77 / 5e-16 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026851 [exp] 77 / 6e-16 AT3G03330 439 / 7e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.007G007300.1 pacid=42765934 polypeptide=Potri.007G007300.1.p locus=Potri.007G007300 ID=Potri.007G007300.1.v4.1 annot-version=v4.1 ATGAGTAAAGCCGACAAGAAGGTAATTAATTTAAGCATGAGCGGGCCTAGGGTTGTGCTGGTCACTGGTTGTGCAAAAGGTGGGATTGGCTTTGAATATT GCAAGGCATTTGCTGAGCATAATTGCCATGTTGTTGCTTCTGACATTCCTCAACGCATCAGTGAAATGTTGGAGCTTGAATCAGAAAATATTGAGACTCT TGGGCTTGATGTTTCATCCAAAGAAAGTGTATCTTCAGCAGTGAGCACAGTCGTATCCAAGTATGGTCACGTTGATGTATTGATCAACAATGCTGGGATA GGAAGTACAGGTCCTTTAGCTGAGTTATCATTGGATGTAATAAGAAAAGCTTGGGAGATTAACACACTAGGGCAATTAAGATTGGTGCAAAACGTCGTGC CATTCATGGCATCTCGGGGCAGCGGTACCATAGTGAATATAGGGAGTGTTGTGGGGAAGGTTCCTACACCATGGGCAGGGTCTTATTGTGCTAGTAAGGC AGCAGTCCATGCCATGTCCAACACCCTGCGTGTTGAGCTAAAACCATTTGGAATTAATGTTGTGCTAGTGTTACCAGGGGCAATAAGATCAAATTTTGGT TCTGCTAGCGTGGAGAGATTAGGAAATCATGACTGGAAGCTATACAAGGACTTCAAAGAGGCTATCGTAGAACGAGCAAAGGCATCTCAAGGTGGCAAGG CAACGGATGCGACCATATTTGCAAGACATGTAGCTAAGAAAGTGTTGAGCCCTAGACCGCCAAGGCAAATTATGTTCGGTCATATGACTGGTTTGTTTGC CATGCTTTCTTGTTCTCCTCTATGGGTTAGAGACCTTTTCTTTTCAACTCGATTTAACCTAAATAAAAAGGTGTAG
AA sequence Show only first row Show all	>Potri.007G007300.1 pacid=42765934 polypeptide=Potri.007G007300.1.p locus=Potri.007G007300 ID=Potri.007G007300.1.v4.1 annot-version=v4.1 MSKADKKVINLSMSGPRVVLVTGCAKGGIGFEYCKAFAEHNCHVVASDIPQRISEMLELESENIETLGLDVSSKESVSSAVSTVVSKYGHVDVLINNAGI GSTGPLAELSLDVIRKAWEINTLGQLRLVQNVVPFMASRGSGTIVNIGSVVGKVPTPWAGSYCASKAAVHAMSNTLRVELKPFGINVVLVLPGAIRSNFG SASVERLGNHDWKLYKDFKEAIVERAKASQGGKATDATIFARHVAKKVLSPRPPRQIMFGHMTGLFAMLSCSPLWVRDLFFSTRFNLNKKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10050			NAD(P)-binding Rossmann-fold s...		Potri.007G007300 [exp]	0	1
AT5G40420		OLE2, PA23, OLE...	oleosin 2 (.1)		Potri.015G081901 [exp]	6.92	0.6784
AT5G28470			Major facilitator superfamily ...		Potri.006G091600 [exp]	11.83	0.6401
AT1G16820			vacuolar ATP synthase catalyti...		Potri.005G106933 [exp]	12.84	0.6357
AT3G02645			Plant protein of unknown funct...		Potri.017G062900 [exp]	13.85	0.6862
					Potri.013G031151 [exp]	32.44	0.6261
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.013G108500 [exp]	38.34	0.7063
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Potri.008G065500 [exp]	42.00	0.6847
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Potri.001G282800 [exp]	47.83	0.6647
AT5G08530		CI51	51 kDa subunit of complex I (....		Potri.008G177801 [exp]	52.67	0.6280
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Potri.007G061540 [exp]	62.83	0.6753

Compare expression of checked genes

Potri.007G007300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.