Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49750 365 / 3e-128 AtRLP44 receptor like protein 44 (.1) AT5G65830 335 / 1e-116 ATRLP57 receptor like protein 57 (.1) AT3G28450 132 / 4e-35 Leucine-rich repeat protein kinase family protein (.1) AT5G48380 101 / 5e-24 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT1G69990 99 / 3e-23 Leucine-rich repeat protein kinase family protein (.1) AT1G27190 95 / 5e-22 Leucine-rich repeat protein kinase family protein (.1) AT4G33430 86 / 1e-18 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT3G43740 82 / 2e-18 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT4G20140 82 / 2e-17 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G01210 82 / 2e-17 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G012300 [exp] 460 / 7e-166 AT3G49750 343 / 1e-119 receptor like protein 44 (.1) Potri.010G177900 [exp] 120 / 1e-30 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G074400 [exp] 119 / 3e-30 AT3G28450 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G349900 [exp] 118 / 5e-30 AT3G28450 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G003800 [exp] 116 / 2e-29 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004216 [exp] 115 / 5e-29 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G138600 [exp] 108 / 2e-26 AT1G27190 712 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G240000 [exp] 105 / 1e-25 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.004G081700 [exp] 102 / 2e-24 AT1G27190 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011561 [exp] 385 / 3e-136 AT3G49750 394 / 7e-140 receptor like protein 44 (.1) Lus10019277 [exp] 385 / 3e-136 AT3G49750 399 / 8e-142 receptor like protein 44 (.1) Lus10034278 [exp] 113 / 3e-29 AT5G48380 189 / 5e-55 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 112 / 1e-27 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10008743 [exp] 106 / 1e-25 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10030812 [exp] 101 / 2e-25 AT3G28450 252 / 6e-80 Leucine-rich repeat protein kinase family protein (.1) Lus10037226 [exp] 96 / 3e-23 AT5G48380 221 / 6e-68 BAK1-interacting receptor-like kinase 1 (.1) Lus10030811 [exp] 98 / 6e-23 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 95 / 8e-22 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10009394 [exp] 94 / 2e-21 AT3G47570 642 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.007G007500.1 pacid=42766104 polypeptide=Potri.007G007500.1.p locus=Potri.007G007500 ID=Potri.007G007500.1.v4.1 annot-version=v4.1 ATGGGTTTTTGGTCAGTCGTGTTGTTTACTTTGTTAACCTGCGCATCTGTCTCAATATCAGATCCAAGTGATGAAGCGTGTTTAACCCACTTTACTCAAT CCTTAAAAGACCCAACAAAATCACTTCAAAACTGGACAAAATCAAATTTTGCAAACCCATGTTATGGTTTCACTTCTTATCTCCCTGGTGCTACTTGCAA CAATGGTCGCATCTATAAGCTTTCTCTAACAAACCTCTCTCTTCAAGGCTCTATCTCTCCTTATTTAGCAAACTGTACCAATCTCCAGTCACTTGACCTC TCCTCTAATCAAATTACAGGTCCTATCCCCGCAGATTTGCAATCCTTGGTCAATCTTGCTGTGCTCAATCTCTCCTCTAATCGGCTTGATGGAGAGATCC CACCACAGATTACAATGTGTGCTTATCTAAATGTTATTGATTTGCATGATAATTTCCTCTCCGGTCAAATCCCACAACAGCTTGGTCTTCTAGTAAGGCT ATCTGCTTTCGATGTGAGCAATAACAAGCTGTCTGGGCCAATACCTGTTTCATTAGGGAATAGGAGCGGTAATTTACCAAGATTCAATGCCACTTCTTTT CTTGGAAATAAGGATCTTTATGGCTACCCTTTGCCTCCAATGAAGACCAAAGGTTTGTCAGTTTTGGCCATTGTTGGGATCGGTTTAGGAAGTGGGTTTG CAAGTTTGGTCCTCAGTTTTACTGGGGTTTGCATTTGGTTGAAGGCTACTGAACAAAAGATGGCACTCGAAGACGGCAAGATTAGCCAGCTCATGCCTGA TTATTGA
AA sequence Show only first row Show all	>Potri.007G007500.1 pacid=42766104 polypeptide=Potri.007G007500.1.p locus=Potri.007G007500 ID=Potri.007G007500.1.v4.1 annot-version=v4.1 MGFWSVVLFTLLTCASVSISDPSDEACLTHFTQSLKDPTKSLQNWTKSNFANPCYGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLANCTNLQSLDL SSNQITGPIPADLQSLVNLAVLNLSSNRLDGEIPPQITMCAYLNVIDLHDNFLSGQIPQQLGLLVRLSAFDVSNNKLSGPIPVSLGNRSGNLPRFNATSF LGNKDLYGYPLPPMKTKGLSVLAIVGIGLGSGFASLVLSFTGVCIWLKATEQKMALEDGKISQLMPDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Potri.007G007500 [exp]	0	1
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Potri.003G167000 [exp]	3.46	0.8356	PtrGrx22
AT3G58850		HLH2, PAR2	phy rapidly regulated 2 (.1)		Potri.005G201500 [exp]	7.07	0.8302
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.010G146500 [exp]	7.61	0.7769
AT5G06940			Leucine-rich repeat receptor-l...		Potri.016G051600 [exp]	13.96	0.8449
AT1G11915			unknown protein		Potri.011G007900 [exp]	14.69	0.8149
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Potri.001G332300 [exp]	19.59	0.7899
AT3G54030			Protein kinase protein with te...		Potri.016G105800 [exp]	19.94	0.8391
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.003G020200 [exp]	21.26	0.8337
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.010G101100 [exp]	23.36	0.7960
AT3G14860			NHL domain-containing protein ...		Potri.011G107800 [exp]	27.12	0.8035

Compare expression of checked genes

Potri.007G007500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.