Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37760 796 / 0 SQE3 squalene epoxidase 3 (.1) AT1G58440 785 / 0 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) AT2G22830 779 / 0 SQE2 squalene epoxidase 2 (.1) AT5G24150 502 / 4e-173 SQP1, SQE5 SQUALENE MONOOXYGENASE 5, FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G24160 484 / 4e-166 SQE6 squalene monoxygenase 6 (.1) AT5G24140 446 / 2e-151 SQP2 squalene monooxygenase 2 (.1) AT5G24155 73 / 2e-15 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G114500 [exp] 823 / 0 AT1G58440 761 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.005G146700 [exp] 819 / 0 AT1G58440 766 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.015G120900 [exp] 802 / 0 AT1G58440 745 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G014376 [exp] 647 / 0 AT1G58440 575 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G014378 [exp] 646 / 0 AT1G58440 603 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.012G121136 [exp] 616 / 0 AT1G58440 564 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.012G120676 [exp] 170 / 9e-51 AT4G37760 170 / 5e-52 squalene epoxidase 3 (.1) Potri.015G121201 [exp] 134 / 3e-37 AT2G22830 132 / 4e-37 squalene epoxidase 2 (.1) Potri.012G121320 [exp] 57 / 1e-09 AT4G37760 54 / 2e-09 squalene epoxidase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039649 [exp] 840 / 0 AT1G58440 791 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10011732 [exp] 836 / 0 AT1G58440 785 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10018654 [exp] 818 / 0 AT1G58440 827 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10007718 [exp] 816 / 0 AT1G58440 828 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01494 [poplar] [flax] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G007600.1 pacid=42765511 polypeptide=Potri.007G007600.1.p locus=Potri.007G007600 ID=Potri.007G007600.1.v4.1 annot-version=v4.1 ATGAATTTGGAGCTCACCAGGGTACCACGACAACTCCCGCTCCACCACAACCACACGTTAAAAGTCTCTCTCCATAAAGGGAAACCTTCCCCTAAAATCT CTATCTACCTTGCCTTCTCCGTATCCTCTTCAAGAAGCACCAAACCACAAACACCCCACAGGAGAAGAGAACCTAAAGAACCAATCTTTGTTTTCTCTTC TTCTTCCTCTTCTTCTTCTTCTGTGCATCAGTGTCATAATTATTATATAAAGAAGATGACGGTGGTGATTGATAAGCACAATGTCCTCGTGGGCACTTTC TTTGCCTTTCTTTTCTTGTACATTTTGCGCCAAAATATCTGGAAAAGAGAAAAGATCAGGAAGAGAACAACATTGAAGATCCAAAACGATAGTGCTGTGT CTGTCTTAAGGCATGAAAATGGAGGAGGCTTCTCCTCTGCTGATGACGTCATTGTTGTCGGTGCTGGTGTTGCTGGTGCTGCCTTGGCTTATACTCTTGG CAAGGATGGAAGACGTGTTCATGTGATAGAAAGAGACATGAAAGAGCCTGACAGAATTGTCGGTGAACTGCTCCAACCCGGGGGATATCTAAAATTAATC GAATTAGGCCTTGAGGATTGTGTGGAGGAAATTGATGCCCAACGAGTGCTTGGATATGCTCTCTTCAAGGATGGGAAGAATACTAGATTGTCATACCCTT TGGAAAAATTCCACACAGATGTTTCTGGGAGAAGCTTCCATAATGGACGTTTCATTCAGAGGATGAGAGAAAAGGCTGCTACCCTGCCCAATGTAAGACT AGAACAAGGAACAGTCACATCTCTGCTTGAAGAAGATGGGACTGTTAAGGGTGTTCAATACAAAACGAAGGATGGCCAAGAACTTAAAGCTTATGCTCCT CTTACAATTGTGTGTGATGGCTGCTTCTCAAATCTGCGCCGCTCTCTATGCAACCCTAAGGTTGATGTGCCTTCGTGTTTCGTGGGTTTGATCCTGGAGA ACTGTCAGCTTCCATTTGAAAATCATGGGCATGTCATTCTAGCAGATCCATCACCAATTTTGTTTTATCCGATTAGCAGCACAGAGGTTCGCTGTTTGGT TGATGTACCAGGTCGAAAAGTGCCTTCCATTGCTAATGGTGAAATGGCCAATTATTTAAAGAACATGGTTGCACCACAGATTCCATCTGAGCTTCGCAAT GCCTTCATATCTGCTATAGATAAAGGTAATATCAGGACCATGCCAAATAGAAGCATGCCAGCGGAACCACATCCTACTCCTGGAGCGCTTCTGATGGGTG ATGCTTTCAACATGCGTCATCCATTAACTGGTGGTGGGATGACTGTGGCATTGTCTGATATTGTTGTACTTCGTGATCTTCTTAAACCACTTCGTGACCT TAATGATGCAGCTTCGTTGACCAAATATCTTGAATCCTTTTACACCTTGCGCAAGCCAGTTGCATCTACGATAAATACTCTAGCAGGTGCTTTGTATAAA GTGTTCTCTGCTTCCTCTGATGATGCAAGGAAGGAAATGCGCGAAGCATGTTTTGACTATTTAAGCCTTGGGGGTAATTTCTCAGCAGGACCTGTGGCAT TACTGTCTGGTCTAAACCCTCGTCCACTGAGTTTGGTCCTTCATTTCTTTGCGGTTGCCGTATATGGTGTTGGTCGTTTGCTACTTCCATTTCCATCGCC TAAACGCGTGTGGATTGGAGCGAGATTAATTTCGAGTGCATCAGGCATTATTTTCCCAATTATCAAAGCAGAGGGAGTGAGGCAAATGTTTTTCCCTGCC ACTATTCCTGCTGTTTATAGAGCTCCTCCTGTTGATTGA
AA sequence Show only first row Show all	>Potri.007G007600.1 pacid=42765511 polypeptide=Potri.007G007600.1.p locus=Potri.007G007600 ID=Potri.007G007600.1.v4.1 annot-version=v4.1 MNLELTRVPRQLPLHHNHTLKVSLHKGKPSPKISIYLAFSVSSSRSTKPQTPHRRREPKEPIFVFSSSSSSSSSVHQCHNYYIKKMTVVIDKHNVLVGTF FAFLFLYILRQNIWKREKIRKRTTLKIQNDSAVSVLRHENGGGFSSADDVIVVGAGVAGAALAYTLGKDGRRVHVIERDMKEPDRIVGELLQPGGYLKLI ELGLEDCVEEIDAQRVLGYALFKDGKNTRLSYPLEKFHTDVSGRSFHNGRFIQRMREKAATLPNVRLEQGTVTSLLEEDGTVKGVQYKTKDGQELKAYAP LTIVCDGCFSNLRRSLCNPKVDVPSCFVGLILENCQLPFENHGHVILADPSPILFYPISSTEVRCLVDVPGRKVPSIANGEMANYLKNMVAPQIPSELRN AFISAIDKGNIRTMPNRSMPAEPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRDLLKPLRDLNDAASLTKYLESFYTLRKPVASTINTLAGALYK VFSASSDDARKEMREACFDYLSLGGNFSAGPVALLSGLNPRPLSLVLHFFAVAVYGVGRLLLPFPSPKRVWIGARLISSASGIIFPIIKAEGVRQMFFPA TIPAVYRAPPVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.007G007600 [exp]	0	1
					Potri.008G148266 [exp]	1.00	0.8448
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.010G027100 [exp]	2.00	0.8053	AHP1.1
AT5G39530			Protein of unknown function (D...		Potri.017G087500 [exp]	2.82	0.7822
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.004G074100 [exp]	3.74	0.7849
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Potri.002G214000 [exp]	4.24	0.7939
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Potri.018G066300 [exp]	6.00	0.7772	SMH903
AT3G15690			Single hybrid motif superfamil...		Potri.001G172600 [exp]	7.74	0.7770
AT5G14210			Leucine-rich repeat protein ki...		Potri.015G093100 [exp]	10.00	0.8028
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Potri.005G124000 [exp]	13.52	0.8071
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Potri.018G054700 [exp]	17.83	0.7090

Compare expression of checked genes

Potri.007G007600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.