Plant FIBer expression Database

Potri.007G007700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G49725 513 / 1e-176 GTP-binding protein, HflX (.1)
AT5G57960 138 / 1e-34 GTP-binding protein, HflX (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G031100
[exp]
125 / 2e-30 AT5G57960 738 / 0.0 GTP-binding protein, HflX (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018403
[exp]
266 / 5e-84 AT3G49725 301 / 1e-97 GTP-binding protein, HflX (.1)
Lus10018404
[exp]
130 / 1e-35 AT3G49725 108 / 2e-28 GTP-binding protein, HflX (.1)
Lus10024287
[exp]
107 / 3e-24 AT5G57960 634 / 0.0 GTP-binding protein, HflX (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF01926 MMR_HSR1 50S ribosome-binding GTPase
CL0023 PF13167 GTP-bdg_N GTP-binding GTPase N-terminal
CL0023 PF16360 GTP-bdg_M GTP-binding GTPase Middle Region
Representative CDS sequence
>Potri.007G007700.1 pacid=42766400 polypeptide=Potri.007G007700.1.p locus=Potri.007G007700 ID=Potri.007G007700.1.v4.1 annot-version=v4.1
ATGGGAATGGGAATGCTAGGAGTGGCAGTACGGTTAAGGCGGTGTCTGAAGCCCCAAAATACTACTGTCCTCTCTTCATACTCATATCACTCGTCGTCTT
CAAACCGGCAAAGAAAGAACGAAAACCAAGTGGATTCGTCCTTCAACAGAGACCCAACAAGCCCACCTCGACTCTTTGTGGTGCAGCCTCGTCTCCGCCC
CGATACTCTCCTTCAAGCCAAGCTCAACGAAGCTCTATGCCTCGCCAATTCCCTCGAAGAACAGCGTGATGGGTACTTCGATTCTGATTTCTTCGATAAA
CCCTTGCCCCCTCACATCCTCGTTCAAAATCCCATCTTCCGTTCCTCCAAAGCTCGAGCAGATACTTACTTTGGGACTGGGACTGTAGACGATATCTTGT
GCCATATCAGAGCAATTGAGTCAAAGGATGATGTTGATGCTGTGTTTGTGAATGCTATTTTAAGTGGGATTCAACTGCGGAATTTGGAGCGGAAATGGAA
TAAACCTGTGTTAGACCGGGTGTCACTTATAATAGAGATATTCAATGCTCATGCCCATACAAAGGAGGCGAAACTTCAGGCGGAATTAGCGGCTCTAATG
TATGCAAAGAGTAGACTTGTTCGAGTACGTAGTAGTGATGGTCGCTTGACTTTCGGAGCATTTGGAGATGCTGAAGTTGTTAGTGCCCGAGGGAGAGGAA
GTGGAGGGCGTGGCTTTACCAGTGGTGCTGGAGAAACTGAGCTTCAGCTTCAGCGGCGAAGAATATTAGAACGGCGTGAGACTTTGCGGACCCAAATCAA
AGATGTTCGTCGTACTCGAGCTTTGCAGCGAGCTTCTCGTAAGAGGCATTGTCAATTGGATAGTCAATATTTGGCCACTGTTGCTGTTGTAGGATACACA
AATGCTGGAAAATCAACATTAGTTAGTGCACTCTCAGGGAATGATCTTTACAGTGATTCTCGACTGTTTGCAACACTGGATGCTAGATTAAAAAGTGTTG
TTCTTCCTTCAGGGAGGAAAGTGCTTCTTGGTGATACTGTGGGATTTATATCAGATTTGCCAGTGCAGTTGGTGCAAGCGTTTCGTGCAACTCTAGAGGA
AGTGGTGGAAGCTGACCTCCTTGTGCATTTGATGGACTCTACTGCTCCTAATCTTGAGGAGCATCGAGCAACTGTGTTGCAAGCTCTTCAGCAAATAGGA
GTGTCAGAAGAGAAATTACAGAATATGATTGAAGTCTGGAATAAGATTGATTACCAGGAAGAAATGGTTGCTGATGAATATCTATGTGATGGTGAAGATG
GTGAGGCTAGCAGTTTGTCTGGTGATGAAGGTGGTGATGTAGCATCAGGAGCAGATGATGAGATCAATGGTTTCTCTGGAAGAAGTGAAGGAGATTTTGA
AGAGACGATAGACAATGAGCAAGATGATTACTCTGGCGACTGGCTGTTGTCAGGAGATGACCAAGAGATGGTAGGTGACCACTGGTTGAAGACTCTGGAT
GAGCAACGAGATGAGGCCTTAAATGACTTGGGGATGGAAAATTTTTTACAATGTCAGGCCCAGCATGGTCCACATCTCAAAATATCTGCCATGACAGGAG
TTGGCTTGCAAGAATTGCTGGAACTCATTGATGACAGGCTAAAGACTCAGGATGAGAAGTTCAAGGAACAAAATGTAGTGGAAAGGGGTTTTTTTAATAA
AAAATGGAGGCCTCCACGTACAGAGGATGCTGGTATAGCAGCTGCTGAACAGTGA
AA sequence
>Potri.007G007700.1 pacid=42766400 polypeptide=Potri.007G007700.1.p locus=Potri.007G007700 ID=Potri.007G007700.1.v4.1 annot-version=v4.1
MGMGMLGVAVRLRRCLKPQNTTVLSSYSYHSSSSNRQRKNENQVDSSFNRDPTSPPRLFVVQPRLRPDTLLQAKLNEALCLANSLEEQRDGYFDSDFFDK
PLPPHILVQNPIFRSSKARADTYFGTGTVDDILCHIRAIESKDDVDAVFVNAILSGIQLRNLERKWNKPVLDRVSLIIEIFNAHAHTKEAKLQAELAALM
YAKSRLVRVRSSDGRLTFGAFGDAEVVSARGRGSGGRGFTSGAGETELQLQRRRILERRETLRTQIKDVRRTRALQRASRKRHCQLDSQYLATVAVVGYT
NAGKSTLVSALSGNDLYSDSRLFATLDARLKSVVLPSGRKVLLGDTVGFISDLPVQLVQAFRATLEEVVEADLLVHLMDSTAPNLEEHRATVLQALQQIG
VSEEKLQNMIEVWNKIDYQEEMVADEYLCDGEDGEASSLSGDEGGDVASGADDEINGFSGRSEGDFEETIDNEQDDYSGDWLLSGDDQEMVGDHWLKTLD
EQRDEALNDLGMENFLQCQAQHGPHLKISAMTGVGLQELLELIDDRLKTQDEKFKEQNVVERGFFNKKWRPPRTEDAGIAAAEQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G49725 GTP-binding protein, HflX (.1) Potri.007G007700
[exp]
0 1
AT1G05270 TraB family protein (.1) Potri.007G121800
[exp]
2.00 0.8652
AT4G35520 MLH3, ATMLH3 MUTL protein homolog 3 (.1) Potri.005G101900
[exp]
2.44 0.8774
AT2G27760 IPPT, ATIPT2 tRNAisopentenyltransferase 2 (... Potri.009G147600
[exp]
3.00 0.8378
AT5G18830 SBP ATSPL7, SPL7 squamosa promoter binding prot... Potri.010G026200
[exp]
5.83 0.8210 SPL7.1
AT3G21810 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.007G121700
[exp]
5.91 0.8546
AT3G50430 unknown protein Potri.005G133500
[exp]
6.00 0.8513
AT1G20760 Calcium-binding EF hand family... Potri.007G063200
[exp]
7.41 0.8311
AT5G49430 WD40/YVTN repeat-like-containi... Potri.010G142700
[exp]
8.48 0.8294
AT4G01270 RING/U-box superfamily protein... Potri.002G164000
[exp]
8.94 0.8357
AT1G17820 Putative integral membrane pro... Potri.018G152400
[exp]
9.16 0.8652

Potri.007G007700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.