Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65780 578 / 0 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) AT3G49680 572 / 0 ATBCAT-3 ,BCAT3 branched-chain aminotransferase 3 (.1.2) AT1G10070 473 / 1e-166 ATBCAT-2 branched-chain amino acid transaminase 2 (.1.2.3) AT1G10060 428 / 3e-149 ATBCAT-1 branched-chain amino acid transaminase 1 (.1.2.3) AT1G50090 416 / 1e-144 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G50110 416 / 1e-144 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT3G19710 360 / 6e-123 BCAT4 branched-chain aminotransferase4 (.1) AT5G27410 70 / 1e-12 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT3G05190 66 / 1e-11 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113600 [exp] 473 / 6e-167 AT1G10070 555 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Potri.009G082600 [exp] 439 / 2e-153 AT1G50110 448 / 4e-158 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Potri.009G082700 [exp] 415 / 9e-144 AT1G10070 446 / 2e-156 branched-chain amino acid transaminase 2 (.1.2.3) Potri.005G039100 [exp] 70 / 8e-13 AT5G27410 882 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011567 [exp] 607 / 0 AT3G49680 615 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10019258 [exp] 604 / 0 AT3G49680 613 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10011604 [exp] 561 / 0 AT3G49680 568 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10028246 [exp] 450 / 4e-155 AT1G10070 498 / 3e-174 branched-chain amino acid transaminase 2 (.1.2.3) Lus10032806 [exp] 436 / 8e-153 AT1G10070 484 / 1e-172 branched-chain amino acid transaminase 2 (.1.2.3) Lus10007247 [exp] 436 / 1e-151 AT1G10070 517 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Lus10028247 [exp] 405 / 5e-141 AT1G10070 469 / 6e-168 branched-chain amino acid transaminase 2 (.1.2.3) Lus10007246 [exp] 293 / 1e-97 AT3G49680 327 / 6e-111 branched-chain aminotransferase 3 (.1.2) Lus10035342 [exp] 64 / 8e-11 AT5G27410 910 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Lus10029984 [exp] 52 / 7e-07 AT5G27410 869 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01063 [poplar] [flax] Aminotran_4 Amino-transferase class IV
Representative CDS sequence Show only first row Show all	>Potri.007G008000.8 pacid=42766142 polypeptide=Potri.007G008000.8.p locus=Potri.007G008000 ID=Potri.007G008000.8.v4.1 annot-version=v4.1 ATGGAGAGAAGCGCCGTCTTTGGTGGTCTGCAACCAAATTACCTTCTTTACCCCTCACCCAACTCTTCATCCCTTCCTTTCTCAGACCACCGCGCTAGAC TTCCAAATTTCTCTCCTCCTCCCTCTCTGTCTCTCAAGATACATAAGCAGGTTTCTTCTTGTTTTAAAGCTGTGTCTCCTTTTAAGCGTGGAGCTGCGTT TTCTGATACACACAGTGACACATTTGAATTAGCTGACATAGACTGGGATGACCTTGGATTTGCATACGTTCCCACTGATTATATGTATTCAATGAAATGC ACTAAAGGTGGAAACTTTTCCAAAGGTGAATTACAGAGATATGGAAACATTGAACTGAACCCTTCTGCTGGCGTCTTAAATTATGGCCAGGGATTGTTTG AAGGTCTGAAAGCCTACAGGAAAGAAGATGGTAACCTTCTTCTATTTCGTCCTGAGGAAAATGCTATGCGGATGATAATGGGTGCAGAGAGGATGTGCAT GCCATCACCGACAATTGATCAGTTTGTGGATGCAGTAAAAGCAACTGTTTTAGCAAACAAACGTTGGGTTCCTCCTCCAGGTAAAGGTTCCTTATATATC AGACCATTGCTAATGGGGAGTGGAGCTGTTCTTGGTCTTGCACCTGCTCCTGAGTATACCTTTCTCATTTATGTTTCACCGGTGGGGAACTATTTTAAGG AAGGTGTGGCACCAATTCATTTAATTGTGGAGCATGAACTTCATCGAGCAACTCCTGGTGGCACTGGAGGTGTGAAGACTATAGGGAATTATGCTGCGGT TCTCAAGGCACAATCTGCTGCAAAAGCCAGAGGTTTTTCTGACGTTTTATATCTTGATTGTGTACATAAAAAGTATCTAGAAGAGGTTTCCTCTTGCAAC ATTTTTGTTGTGAAGGGTAACAGCATCTCCACTCCTGCAATAAAAGGGACAATCCTACCAGGAATTACAAGGAAGAGCATAATTGATGTTGCTCGAAGCC AAGGATTTCAGGTTGAGGAACGGCTTGTGACAGTAGATGAATTGCTTGATGCTGATGAGGTTTTTTGTACCGGAACAGCTGTTGTTGTGTCACCTGTGGG AAGCATCACCTACAAGGGTAAAAGGGTGTCTTATGGCGTAGAAGGTTTTGGTGCTGTCTCGCAACAACTCTATAGTGTGCTAACCAAGCTACAGATGGGC CTTATAGAGGACAAGATGAATTGGACTGTGGAGCTGAGTTAG
AA sequence Show only first row Show all	>Potri.007G008000.8 pacid=42766142 polypeptide=Potri.007G008000.8.p locus=Potri.007G008000 ID=Potri.007G008000.8.v4.1 annot-version=v4.1 MERSAVFGGLQPNYLLYPSPNSSSLPFSDHRARLPNFSPPPSLSLKIHKQVSSCFKAVSPFKRGAAFSDTHSDTFELADIDWDDLGFAYVPTDYMYSMKC TKGGNFSKGELQRYGNIELNPSAGVLNYGQGLFEGLKAYRKEDGNLLLFRPEENAMRMIMGAERMCMPSPTIDQFVDAVKATVLANKRWVPPPGKGSLYI RPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGVAPIHLIVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKARGFSDVLYLDCVHKKYLEEVSSCN IFVVKGNSISTPAIKGTILPGITRKSIIDVARSQGFQVEERLVTVDELLDADEVFCTGTAVVVSPVGSITYKGKRVSYGVEGFGAVSQQLYSVLTKLQMG LIEDKMNWTVELS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65780		ATBCAT-5	branched-chain amino acid amin...		Potri.007G008000 [exp]	0	1
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Potri.003G215100 [exp]	2.64	0.7226	Pt-THFS.1,FTHFS2
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Potri.002G254900 [exp]	13.45	0.7582	FDH1
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Potri.016G038200 [exp]	15.74	0.7347	CBL.1
AT2G17880			Chaperone DnaJ-domain superfam...		Potri.005G240700 [exp]	19.28	0.7229
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.002G120600 [exp]	20.56	0.7404
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.013G022000 [exp]	21.58	0.7479	Pt-LOX1.6
AT3G21690			MATE efflux family protein (.1...		Potri.011G002900 [exp]	33.88	0.6837
AT5G44450			methyltransferases (.1)		Potri.011G157500 [exp]	41.67	0.6339
AT4G11240		TOPP7	Calcineurin-like metallo-phosp...		Potri.001G098600 [exp]	44.83	0.6478	PP1.4
AT1G18335			Acyl-CoA N-acyltransferases (N...		Potri.012G041400 [exp]	47.37	0.6954

Compare expression of checked genes

Potri.007G008000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.