Plant FIBer expression Database

Potri.007G008300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65740 378 / 1e-132 zinc ion binding (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0208 UBC PF09765 FANCL_d1 FANCL UBC-like domain 1
Representative CDS sequence
>Potri.007G008300.6 pacid=42765371 polypeptide=Potri.007G008300.6.p locus=Potri.007G008300 ID=Potri.007G008300.6.v4.1 annot-version=v4.1
ATGGATTTTATTGAGCAGAAAAGACACAAAGAGCTGGCCAATCCATCTTCATTTTACCGCTTGGTCTACTCAGAGATAGAAGAAGTTGGATGGGAGCGTC
TGGTTCGTTTCGGTGGAGATTTAGAGTTCCTTAGTTTTCGTATTACTGATAAGAAGGGAAGAGTTCATATCATGGAAATTCAGTTGGATAAAACCTATCC
GCAAAAGCCACCTTCAGTTTCTGCGGAGGTACCATATATATTCAATGTTAAATGGTCAGTAAAATCAAGATTAAAAGATTTGGTGCAACAGTTCCGAGAG
CATTTGGAAGAGCTTCAGGAGTTTTGGTCTACCTTGGAGGATATTGATCATTCTCTTTGTGTCACTAACAAGAAAAAGTTGTCTCGCGCCACAACTTGTC
GCCAAATTGATATAGGAAATGATTGTTCGATAATGTTGTCTATAAATGCCAGAGATCCTAGATCTTTGCCAGAGTGTCGCTTTATGGGCTCTGGTCCAGT
GGTGAACCCTGTGAGAAAGTTATGGCTAAGAAACAACAAACGATGGATGAAGGATAAAACACTTCCTGAAAATCTTGCATTTATTCTGGAGACTGAACTA
CCAAGACCATCACATGTCCTGGAGAATGATCAGCAAGTTGAATGTGGAATCTGTTATGCCCAATACCTTCCCATCGATGAGGAGCTTGGATCTAGGAGTG
GTGCTGGAACTGACCATACATGTGATAATACCAGTTGTGGCAGGGCTTTCCATACTGTTTGTCTGGTGGACTGGCTGCGCTCTATCACCACAACTAGGCA
ATCGTTTGATGTCCTGTTTGGTAATTGCCCGTACTGTTCCGAGCCTGTTGCAGTCAAATTGAACGATAAAAAGAAGCATGTCTAG
AA sequence
>Potri.007G008300.6 pacid=42765371 polypeptide=Potri.007G008300.6.p locus=Potri.007G008300 ID=Potri.007G008300.6.v4.1 annot-version=v4.1
MDFIEQKRHKELANPSSFYRLVYSEIEEVGWERLVRFGGDLEFLSFRITDKKGRVHIMEIQLDKTYPQKPPSVSAEVPYIFNVKWSVKSRLKDLVQQFRE
HLEELQEFWSTLEDIDHSLCVTNKKKLSRATTCRQIDIGNDCSIMLSINARDPRSLPECRFMGSGPVVNPVRKLWLRNNKRWMKDKTLPENLAFILETEL
PRPSHVLENDQQVECGICYAQYLPIDEELGSRSGAGTDHTCDNTSCGRAFHTVCLVDWLRSITTTRQSFDVLFGNCPYCSEPVAVKLNDKKKHV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G65740 zinc ion binding (.1.2.3.4) Potri.007G008300
[exp]
0 1
AT3G18080 BGLU44 B-S glucosidase 44 (.1) Potri.012G049300
[exp]
11.18 0.7579
AT5G45920 SGNH hydrolase-type esterase s... Potri.011G063800
[exp]
15.16 0.7832
AT3G24590 PLSP1 plastidic type i signal peptid... Potri.002G079600
[exp]
16.49 0.6806
AT2G32150 Haloacid dehalogenase-like hyd... Potri.008G151700
[exp]
19.13 0.7820 NOD33.2
AT4G30460 glycine-rich protein (.1) Potri.006G178200
[exp]
23.40 0.7859
Potri.008G105401
[exp]
24.49 0.7684
AT5G24620 Pathogenesis-related thaumatin... Potri.015G000800
[exp]
33.36 0.7594
AT4G20990 ATACA4, ACA4 A. THALIANA ALPHA CARBONIC ANH... Potri.016G043700
[exp]
34.49 0.7672
AT2G18660 AtPNP-A, PNP-A,... plant natriuretic peptide A (.... Potri.006G179300
[exp]
38.78 0.7738
Potri.008G028200
[exp]
39.79 0.7639

Potri.007G008300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.