Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	XTH2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65730 473 / 4e-170 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT4G37800 469 / 6e-169 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT5G13870 314 / 2e-107 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT4G03210 303 / 3e-103 XTH9, EXGT-A6, XTR16 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) AT2G06850 300 / 7e-102 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1) AT4G14130 290 / 3e-98 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT3G23730 289 / 1e-97 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT1G11545 285 / 9e-96 XTH8 xyloglucan endotransglucosylase/hydrolase 8 (.1) AT5G57560 280 / 2e-94 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G25810 278 / 1e-93 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G071000 [exp] 323 / 8e-111 AT5G13870 504 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.003G159700 [exp] 320 / 7e-110 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.014G140300 [exp] 315 / 9e-108 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.013G152400 [exp] 302 / 6e-103 AT4G03210 442 / 2e-158 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.019G125000 [exp] 298 / 4e-101 AT4G03210 450 / 3e-161 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.005G201200 [exp] 291 / 2e-98 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.011G077320 [exp] 291 / 2e-98 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.005G201250 [exp] 290 / 4e-98 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.009G083800 [exp] 289 / 9e-98 AT2G14620 454 / 1e-162 xyloglucan endotransglucosylase/hydrolase 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039643 [exp] 489 / 2e-176 AT5G65730 469 / 1e-168 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10011597 [exp] 488 / 5e-176 AT5G65730 469 / 7e-169 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10039715 [exp] 318 / 4e-109 AT4G03210 441 / 1e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10018503 [exp] 317 / 1e-108 AT4G03210 439 / 9e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10003022 [exp] 315 / 6e-108 AT5G13870 506 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10011052 [exp] 316 / 1e-107 AT5G13870 507 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10040121 [exp] 313 / 4e-107 AT5G13870 493 / 5e-178 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10030923 [exp] 312 / 9e-107 AT5G13870 491 / 3e-177 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10031586 [exp] 306 / 4e-104 AT4G03210 446 / 9e-160 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10035654 [exp] 292 / 9e-99 AT2G14620 437 / 6e-156 xyloglucan endotransglucosylase/hydrolase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00722 [poplar] [flax] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [poplar] [flax] Concanavalin PF06955 [poplar] [flax] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Potri.007G008500.5 pacid=42766512 polypeptide=Potri.007G008500.5.p locus=Potri.007G008500 ID=Potri.007G008500.5.v4.1 annot-version=v4.1 ATGATCATGACCATGTTTCTTCAATCTCTCTCCCTGAGAAAGGCTAGTGTCTTTCTTTTCTTTTCCTTCCTTGCATTTCCTCTCCACGTCTCGGCTCGAC CGGCAACTTTTCTTCAAGACTTTAGAGTCACATGGTCCGATTCCCATATCAGGCAAATCGATGGAGGGAGGGCTATCCAACTCGTTCTAGACCAATATTC AGGATGTGGGTTTGCATCCAAGGCCAAGTACTTGTTCGGCCGTGTTAGCATGAGGATCAAGCTCATCCCTGGAGACTCTGCTGGGACTGTCACTGCCTTT TATATGAATTCGGACACCGATGCCGTTCGAGATGAGCTTGATTTTGAATTTCTGGGGAATAGGACAGGGCAGCCTTACACGGTTCAAACAAATATCTTTG CTCATGGAAAGGGTGATAGAGAACAGAGAGTTAACCTGTGGTTTGATCCTGCTGCAGACTTCCACCTCTACACAATTTTCTGGAACCATCAACATATTGT GTTCTTCGTAGATGATGTGCCTATCAGGGTTTACAAGAACAATGAGGCGAAAGGAATTCCATTTCCAAAGCTCCAGCCTATGGGGGTATATTCAACACTG TGGGAGGCCGACGATTGGGCAACAAGAGGTGGCCTAGAAAAGATTAATTGGAGCAAAGCCCCTTTCTATGCATACTACAAGGACTTCGACATCGAGGGAT GTCCGGTTCCAGGACCAGCAACCTGTGCTTCAAATCGTGGAAACTGGTGGGAAGGTGCTACTTACCAAGCCCTCAACGCCATGGAAGCTAGGAAATATAG ATGGGTCCGTATGAACCACATGATTTATGATTACTGTGCCGACAAATCCCGTTATCCGACTACACCACCAGAGTGCGTTGCCGGTATCTAG
AA sequence Show only first row Show all	>Potri.007G008500.5 pacid=42766512 polypeptide=Potri.007G008500.5.p locus=Potri.007G008500 ID=Potri.007G008500.5.v4.1 annot-version=v4.1 MIMTMFLQSLSLRKASVFLFFSFLAFPLHVSARPATFLQDFRVTWSDSHIRQIDGGRAIQLVLDQYSGCGFASKAKYLFGRVSMRIKLIPGDSAGTVTAF YMNSDTDAVRDELDFEFLGNRTGQPYTVQTNIFAHGKGDREQRVNLWFDPAADFHLYTIFWNHQHIVFFVDDVPIRVYKNNEAKGIPFPKLQPMGVYSTL WEADDWATRGGLEKINWSKAPFYAYYKDFDIEGCPVPGPATCASNRGNWWEGATYQALNAMEARKYRWVRMNHMIYDYCADKSRYPTTPPECVAGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Potri.007G008500 [exp]	0	1	XTH2.2
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.014G152000 [exp]	1.41	0.9399
					Potri.010G007976 [exp]	2.00	0.9269
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231500 [exp]	2.82	0.9133
AT5G50915	bHLH	bHLH137	basic helix-loop-helix (bHLH) ...		Potri.012G104900 [exp]	3.31	0.9043
AT5G27730			Protein of unknown function (D...		Potri.013G016900 [exp]	3.46	0.9224
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Potri.002G229900 [exp]	3.60	0.9007	GLR3.3
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.005G222300 [exp]	5.91	0.9142
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Potri.006G140500 [exp]	7.07	0.9177
AT5G49760			Leucine-rich repeat protein ki...		Potri.003G046450 [exp]	7.48	0.8982
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Potri.019G045900 [exp]	8.66	0.8977

Compare expression of checked genes

Potri.007G008500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.