Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22790 153 / 1e-43 unknown protein AT5G67020 145 / 5e-40 unknown protein AT3G50340 125 / 2e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G044200 [exp] 157 / 2e-44 AT5G67020 537 / 0.0 unknown protein Potri.005G138300 [exp] 150 / 1e-41 AT5G67020 520 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011589 [exp] 283 / 2e-93 AT2G22790 166 / 4e-48 unknown protein Lus10011575 [exp] 231 / 9e-73 AT2G22790 160 / 8e-46 unknown protein Lus10019249 [exp] 183 / 9e-55 AT5G67020 141 / 2e-38 unknown protein Lus10019345 [exp] 114 / 2e-30 AT5G67020 248 / 2e-82 unknown protein Lus10009357 [exp] 79 / 1e-17 ND 167 / 2e-51
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G008900.1 pacid=42765183 polypeptide=Potri.007G008900.1.p locus=Potri.007G008900 ID=Potri.007G008900.1.v4.1 annot-version=v4.1 ATGGCAGCAACAAAACAGAACACAGTACTAGTATGTTTCTCCTTTGCTGCCTATGCCAAGACCTTATTAGACCACCTCAAATCACTCAACATCCCAATCC TCCCTGGCCTCACAGACTCTGAATTCACCTCTATCGAATCCACCTTCCACTTCACTTTCCCACCTGACCTTCGGTCCATTCTCCAAGAAGGACTCCCCAT TGGACCTCACTTCCCTAACTGGCGTTCCTCCTCTTTACAACAACTCCAAATCCTCTTAAACCTTCCTTCCTTGAACCTCTGTAAGAATATCTCTCTAAAC AACTTCTGGGTTGATTCTTGGGGTCGTAGACCTCAAGATACTAACAAAGCCCTAGATTTTGCAAAACAGTTCTTGGATAAAGCACCAGTTCTTGTGCCCA TTTATAGAAACTGTTATATTCCTTCTTCCCCTAACGTGTCCGGTAACCCCGTCTTTCACGTTGATGATGAACAAGTGTGTGTTTTGAGCTTTGATGTTAC TAGGTTTTTTCAACAAGTTGATTTCTTGCAAGTGGGGTTTCCTATACGTTCGTCAAGAAACGAAAATGTATCCATGAATGTGCCTGCGTGGGCAGCGACA GAGGCCCGGAAGATAGAATTTTGGACGGAGGTGGCGGAGAGAGGGAGGAGAGTGGTGGCGCGTGGAGATACTCCTCGGTGGTGGAAAGATGTTGGTGGGG GTTCAGATCATTTTGAGTTAAGGGAATGTTTGGAAGAGGTGTTTTGGAGGTTGAGGGATGGAGGGTGGAGAGAAGAGGAGGTGAGAGAGATGATGAACGG CTGCGATCAAGGGATCAGAGAGAATGGTGGTGGTTGTGGGACCACAAAGTTTGATAAAGAGGATGTGTTCTGGCACGGTAGGATGTGGTCAATTGTGTTG TTGCGTGCGGGACGGAGCATGGAAGATGTTGTGCACTTGCTTGATCTTGAAGAATTACAACTTCCAAACAGCTGTTCCAGAGAGGATGATGATCATAAAA AAAACAGTATCAAGCAGTTAATGAAGCTGAGGTCTCTTGAAGTTTGA
AA sequence Show only first row Show all	>Potri.007G008900.1 pacid=42765183 polypeptide=Potri.007G008900.1.p locus=Potri.007G008900 ID=Potri.007G008900.1.v4.1 annot-version=v4.1 MAATKQNTVLVCFSFAAYAKTLLDHLKSLNIPILPGLTDSEFTSIESTFHFTFPPDLRSILQEGLPIGPHFPNWRSSSLQQLQILLNLPSLNLCKNISLN NFWVDSWGRRPQDTNKALDFAKQFLDKAPVLVPIYRNCYIPSSPNVSGNPVFHVDDEQVCVLSFDVTRFFQQVDFLQVGFPIRSSRNENVSMNVPAWAAT EARKIEFWTEVAERGRRVVARGDTPRWWKDVGGGSDHFELRECLEEVFWRLRDGGWREEEVREMMNGCDQGIRENGGGCGTTKFDKEDVFWHGRMWSIVL LRAGRSMEDVVHLLDLEELQLPNSCSREDDDHKKNSIKQLMKLRSLEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22790			unknown protein		Potri.007G008900 [exp]	0	1
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026700 [exp]	2.23	0.9707
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G025900 [exp]	3.16	0.9696
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026500 [exp]	4.24	0.9695
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026000 [exp]	5.47	0.9682
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G025800 [exp]	5.65	0.9694
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.005G257200 [exp]	6.32	0.9493
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Potri.015G148200 [exp]	6.48	0.9608
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.002G003800 [exp]	6.92	0.9540
AT1G65870			Disease resistance-responsive ...		Potri.016G060700 [exp]	7.93	0.9574
AT5G64700			nodulin MtN21 /EamA-like trans...		Potri.019G004100 [exp]	10.39	0.9483

Compare expression of checked genes

Potri.007G008900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.