Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MDH.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22780 612 / 0 PMDH1 peroxisomal NAD-malate dehydrogenase 1 (.1) AT5G09660 560 / 0 PMDH2 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) AT1G53240 424 / 3e-149 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT3G15020 418 / 7e-147 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT3G47520 404 / 2e-140 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) AT4G17260 70 / 5e-13 Lactate/malate dehydrogenase family protein (.1) AT3G53910 61 / 1e-11 malate dehydrogenase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081600 [exp] 598 / 0 AT2G22780 602 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.001G287400 [exp] 588 / 0 AT2G22780 588 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.011G096300 [exp] 437 / 2e-154 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.004G054200 [exp] 426 / 6e-150 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.001G376500 [exp] 421 / 4e-148 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.017G102000 [exp] 417 / 3e-145 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.004G112800 [exp] 413 / 1e-143 AT3G47520 583 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G101900 [exp] 409 / 3e-142 AT3G47520 580 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G152000 [exp] 246 / 2e-80 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039642 [exp] 625 / 0 AT2G22780 617 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10011587 [exp] 556 / 0 AT2G22780 547 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10012459 [exp] 546 / 0 AT2G22780 578 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10020501 [exp] 444 / 2e-157 AT5G09660 482 / 2e-172 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) Lus10017939 [exp] 437 / 4e-154 AT1G53240 578 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10038323 [exp] 428 / 9e-151 AT3G15020 578 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Lus10034458 [exp] 410 / 1e-142 AT3G47520 572 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10019096 [exp] 407 / 3e-141 AT3G47520 575 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10000275 [exp] 402 / 2e-139 AT3G47520 543 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10021666 [exp] 399 / 2e-138 AT3G47520 542 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00056 [poplar] [flax] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain CL0341 [poplar] [flax] LDH_C PF02866 [poplar] [flax] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G009100.1 pacid=42764854 polypeptide=Potri.007G009100.1.p locus=Potri.007G009100 ID=Potri.007G009100.1.v4.1 annot-version=v4.1 ATGCAGCAATCCAATCTACGCGTTGCAAGAATTGCAGCCCATATTAATCCTCCAAATCTCCAGATGGTGGAGGAGGATTTGGGTCTGGAGCGGGTGAATT GCCGAGCCAAAGGAGCATCATCTGGGTTCAAGGTTGCTATACTGGGAGCTGCAGGAGGCATAGGGCAGCCACTGGCTATGTTAATGAAGATGAACCCATT GGTTTCTCTTCTTCACTTGTATGATGTCGTCAATGCTCCTGGTGTCACTGCTGATATTAGTCACATGGACACTTCTGCTGTGGTTCGTGGGTTCTTGGGG CAGCAGCAATTAGAGGATGCTCTAATAGGGATGGATCTTGTAATCATTCCCGCTGGTGTTCCTAGAAAACCAGGAATGACGAGGGATGATCTCTTCAACA TCAATGCTGGAATTGTTAAGACTCTTTGTGAAGCAATTGCTAAATGCTGCCCAAAAGCTATTGTCAACATAATTAGCAATCCTGTTAATTCCACAGTTCC AATTGCAGCTGAAGTCTTCAAGAAAGCTGGTGTCTTTGATCCGAAACGAGTTTTGGGAGTCACGATGCTTGATGTTGTCAGAGCCAATACTTTTGTGGCA GAAATTATGGGTCTTGATCCTAGGGAGGTTGATGTTCCAGTTGTCGGGGGTCATGCTGGGGTTACTATATTACCTCTTCTATCACAGGTAAAACCTTTGT GCTCATTCACACAGAAAGAAATAGACTACTTGACAGATCGTATTCAAAATGGCGGAACAGAAGTTGTTGAGGCAAAGGCTGGAGCTGGTTCTGCGACACT ATCAATGGCATATGCTGCTGTTAAATTTGCAGATGCTTGCCTCCGGGCCTTGAGAGGAGACGCTGCTGTTGTCCATTGTGCATATGTAGCTTCTGCGGTG ACCGAACTGCCTTTCTTCGCATCCAAGGTACGGCTCGGCCGTAACGGAGTAGAGGAGATTTACCCACTTGGACCCCTCAATGATTATGAAAGGGCTGGTT TGGAGAAAGCAAAGAAAGAGCTAGCAGGAAGCATTCAGAAGGGGGTTTCCTTTGTAAAGAAATGA
AA sequence Show only first row Show all	>Potri.007G009100.1 pacid=42764854 polypeptide=Potri.007G009100.1.p locus=Potri.007G009100 ID=Potri.007G009100.1.v4.1 annot-version=v4.1 MQQSNLRVARIAAHINPPNLQMVEEDLGLERVNCRAKGASSGFKVAILGAAGGIGQPLAMLMKMNPLVSLLHLYDVVNAPGVTADISHMDTSAVVRGFLG QQQLEDALIGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGVFDPKRVLGVTMLDVVRANTFVA EIMGLDPREVDVPVVGGHAGVTILPLLSQVKPLCSFTQKEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRALRGDAAVVHCAYVASAV TELPFFASKVRLGRNGVEEIYPLGPLNDYERAGLEKAKKELAGSIQKGVSFVKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Potri.007G009100 [exp]	0	1	Pt-MDH.1
AT5G53880			unknown protein		Potri.011G117001 [exp]	18.73	0.7254
AT5G35110			unknown protein		Potri.018G113700 [exp]	19.00	0.6861
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Potri.001G189700 [exp]	21.23	0.6698
AT4G27280			Calcium-binding EF-hand family...		Potri.011G039600 [exp]	23.32	0.6773
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.015G007600 [exp]	23.49	0.7277
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057600 [exp]	26.26	0.6885	CCRL2,CCR.9
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G149200 [exp]	26.36	0.7014
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.015G067400 [exp]	33.58	0.6627
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Potri.015G143700 [exp]	37.14	0.6860
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Potri.006G224500 [exp]	40.84	0.5823

Compare expression of checked genes

Potri.007G009100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.