Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37840 520 / 0 HKL3 hexokinase-like 3 (.1) AT4G29130 462 / 1e-159 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) AT2G19860 460 / 1e-158 ATHXK2 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) AT1G47840 357 / 2e-118 HXK3 hexokinase 3 (.1) AT1G50460 323 / 2e-105 ATHKL1, HKL1 hexokinase-like 1 (.1) AT3G20040 322 / 5e-105 HKL2, ATHXK4 HEXOKINASE-LIKE 2, Hexokinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190400 [exp] 478 / 9e-166 AT4G29130 649 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.018G088300 [exp] 469 / 1e-162 AT4G29130 743 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.005G238600 [exp] 410 / 3e-139 AT1G47840 644 / 0.0 hexokinase 3 (.1) Potri.001G254800 [exp] 367 / 3e-122 AT1G50460 620 / 0.0 hexokinase-like 1 (.1) Potri.009G050000 [exp] 347 / 1e-114 AT1G50460 576 / 0.0 hexokinase-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038287 [exp] 459 / 2e-158 AT4G29130 734 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10012946 [exp] 456 / 4e-157 AT2G19860 701 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10037588 [exp] 447 / 1e-153 AT4G29130 709 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10011584 [exp] 429 / 2e-147 AT4G37840 374 / 1e-125 hexokinase-like 3 (.1) Lus10006843 [exp] 423 / 3e-144 AT4G29130 710 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10002041 [exp] 406 / 2e-137 AT1G47840 643 / 0.0 hexokinase 3 (.1) Lus10024336 [exp] 405 / 5e-137 AT1G47840 646 / 0.0 hexokinase 3 (.1) Lus10025815 [exp] 374 / 1e-123 AT2G19860 582 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10005019 [exp] 346 / 5e-114 AT1G50460 670 / 0.0 hexokinase-like 1 (.1) Lus10019038 [exp] 325 / 4e-106 AT1G50460 636 / 0.0 hexokinase-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00349 [poplar] [flax] Hexokinase_1 Hexokinase CL0108 [poplar] [flax] Actin_ATPase PF03727 [poplar] [flax] Hexokinase_2 Hexokinase
Representative CDS sequence Show only first row Show all	>Potri.007G009300.1 pacid=42766523 polypeptide=Potri.007G009300.1.p locus=Potri.007G009300 ID=Potri.007G009300.1.v4.1 annot-version=v4.1 ATGAGGAAGGAAGCGGTGGTGTTGGCAACAGTGACAACAGTGGCAGTCGTAGCTGTATTGGTGAGGCAATACTCATTAAAAAAACAAAGACAATGGAAGC AAACACAGCGCATTTTGCGTAAATTTGCAAGGGAATCTGCCACTCCTGTACCCAAACTTTGGGAAGTGGCTAATGCATTGGTTTCTGACATGCAAGCATC TCTTGTTTCTCAGGAGGAAACTAGTACCCTCAACATGCTTGTTTCGTATGCTGCCTCACTACCAAAAGGGGATGAGAAGGGGCTGTATTATGGGTTGAAT TTGCGAGGAACCAATTTTTTAATTTTATGTGCTCGACTTGGAGGGAGAAATGAGCCTATTTCTGATTTATATAGGAAGGAAATTTCCATACCCCCCAATG TGTTGTCTGGTACCTCTCAGGAGTTATTCGACTACATTGCTGTGGAGCTAGCAAAGTTCGTTTCAGAGCATCCCCCAGATGATACTCTTGATGCGCCAGA AAGGGAAAAGAAACTGGGCTTCACTGTGTCATATCCGGTGGATCAAGCTGCAGCTAGTTCCGGCTCTGCTATTAAATGGAAGAGCTTCTCAGCTAATGAC ACAGTTGAGAAAGCATTGATCAATGATATCAATAGAGCTTTGGAGAAACATGGTCTCAAGTTCCGTGTTTTTTCACTGGTTGATGATACTGTAGGAAATT TGGCTGGAGGTAGATACTATAACAACGGCATTGTGGCTTCAGTTACTCTAGCCATGGGTTCAAATGCTGCTTATGTTGAACCAAATGAAGCAGTTCCTAA ATGGCAAGGGCCAATGCCATCATCCAATTCGGGCGAGTTGGTTATCAACACGGAATGGGGAAACTTCAATTGCTCAAACCTTCCAGTGACTGAATTTGAT TCTAGTTTAGATTCAGAAAGCTCAAACCCTGGTTGCAGGATCTTCGAAAAGCTTACTTCAGCCATGTACCTGGGAGAAATTGTTAGAAGAGTCTTGCTGA AGATGGCCCAGGAAACAGCACTCTTCGGAGACGTCGTCCCTCCAAAACTAGCTACTCCATACCAACTAAGGTCACCTGACATGGCTGCCATGCATCAAGA TACATCAGAGGATCATGGTGTGGTTGGTGAGAAGCTGAAGGAAAATCTTGGGATCACAAATTCTACTCCAATGGTAAGGGAGGTAGTGGCTGAGGTTTGT GACATCGTTGCGGAACGCGGTGCCCGTCTTGCTGGAGCAGGTATTGTGGGAATCATAAAAAAGCTTGGAAGGATTGAAAGCAGAAAAAGTGTAGTAACTG TGGAAGGTGGACTTTATGAGCATTATAGAGTCTTTAGAAACTATCTCCATAGCAGTGTCTGGGAGATGCTGGGCAGTGACCATTCAGATAATGTAGTAAT TGAACATTCTCATGGTGGTTCTGGAGCTGGAGCTGTCTTCTTAGCTGCTTGCCAAAACACAAAATCTTTTTGA
AA sequence Show only first row Show all	>Potri.007G009300.1 pacid=42766523 polypeptide=Potri.007G009300.1.p locus=Potri.007G009300 ID=Potri.007G009300.1.v4.1 annot-version=v4.1 MRKEAVVLATVTTVAVVAVLVRQYSLKKQRQWKQTQRILRKFARESATPVPKLWEVANALVSDMQASLVSQEETSTLNMLVSYAASLPKGDEKGLYYGLN LRGTNFLILCARLGGRNEPISDLYRKEISIPPNVLSGTSQELFDYIAVELAKFVSEHPPDDTLDAPEREKKLGFTVSYPVDQAAASSGSAIKWKSFSAND TVEKALINDINRALEKHGLKFRVFSLVDDTVGNLAGGRYYNNGIVASVTLAMGSNAAYVEPNEAVPKWQGPMPSSNSGELVINTEWGNFNCSNLPVTEFD SSLDSESSNPGCRIFEKLTSAMYLGEIVRRVLLKMAQETALFGDVVPPKLATPYQLRSPDMAAMHQDTSEDHGVVGEKLKENLGITNSTPMVREVVAEVC DIVAERGARLAGAGIVGIIKKLGRIESRKSVVTVEGGLYEHYRVFRNYLHSSVWEMLGSDHSDNVVIEHSHGGSGAGAVFLAACQNTKSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37840		HKL3	hexokinase-like 3 (.1)		Potri.007G009300 [exp]	0	1
AT5G02140			Pathogenesis-related thaumatin...		Potri.006G088100 [exp]	2.00	0.9732
AT3G30340			nodulin MtN21 /EamA-like trans...		Potri.014G108500 [exp]	5.83	0.9701
AT1G79480			Carbohydrate-binding X8 domain...		Potri.006G008200 [exp]	9.16	0.9596
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.001G061600 [exp]	9.59	0.9324
AT5G65380			MATE efflux family protein (.1...		Potri.002G102000 [exp]	10.58	0.9563
AT3G03430			Calcium-binding EF-hand family...		Potri.014G030800 [exp]	11.74	0.9571
					Potri.003G217600 [exp]	13.85	0.9316
AT1G79480			Carbohydrate-binding X8 domain...		Potri.010G173500 [exp]	14.14	0.9573
AT1G19530			unknown protein		Potri.005G228600 [exp]	15.87	0.9239
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Potri.001G189900 [exp]	16.97	0.9536

Compare expression of checked genes

Potri.007G009300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.