Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37850 130 / 1e-34 bHLH bHLH025 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22750 123 / 4e-32 bHLH bHLH018 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G22760 117 / 6e-30 bHLH bHLH019 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22770 66 / 1e-11 bHLH NAI1, bHLH020 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G32640 54 / 8e-08 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT2G46510 53 / 2e-07 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G01260 53 / 2e-07 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G16430 53 / 2e-07 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G17880 53 / 3e-07 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 52 / 3e-07 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G287200 [exp] 151 / 2e-42 AT4G37850 215 / 7e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G081400 [exp] 149 / 8e-42 AT4G37850 209 / 3e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G095250 [exp] 140 / 2e-38 AT4G37850 213 / 5e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G172101 [exp] 54 / 9e-08 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G054100 [exp] 54 / 1e-07 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G142200 [exp] 54 / 1e-07 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G099700 [exp] 54 / 1e-07 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G221100 [exp] 54 / 1e-07 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G042000 [exp] 54 / 1e-07 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003488 [exp] 184 / 2e-54 AT4G37850 212 / 6e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011578 [exp] 150 / 1e-42 AT4G37850 209 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10019247 [exp] 148 / 4e-41 AT4G37850 217 / 3e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039639 [exp] 139 / 9e-38 AT4G37850 191 / 3e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10020503 [exp] 129 / 6e-35 AT4G37850 187 / 4e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012457 [exp] 127 / 2e-34 AT4G37850 188 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039640 [exp] 101 / 1e-23 AT4G37850 156 / 2e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006085 [exp] 70 / 1e-13 AT2G22760 72 / 6e-15 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10004575 [exp] 54 / 9e-08 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10018787 [exp] 54 / 9e-08 AT4G16430 447 / 8e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G009400.4 pacid=42765967 polypeptide=Potri.007G009400.4.p locus=Potri.007G009400 ID=Potri.007G009400.4.v4.1 annot-version=v4.1 ATGGATATAGCAGCAGGGAAATGGCTTAGTGAGATGGGCATGGATGATTACAAATTCATCCATCAATGCAATATCAACTCTCTTGCCGAGTTCACCGCAC AAAACATGGCAACTACTCTACTGGGAGAAAACCTCCAACGATCTTTCTCTTCCGAGAGTTTCTCCTCGAAACCCAGTTTAATGATGACCAGAAACACCAC GATCACCAGTACTTCAAATGGTTCCTCCTCTGAAACGTCTCAGACCAGCATTGAAACACCTGGAAAACAGCAGAGAACTAACAGCTGGAACTCTAGCATC TCCACCCTGCACCAATCGCCAAAACCACCTTCTCCTATTCCTGAAAGTTTTTCTTTCAACAACTCAGCTCCACCACCTACGGCCAGTTCCCAGCAGTTTT ACGGAAATCTTGGCCGCTTGATCAAGTCTAAGGATGAGGCTGCATCTCCAATAAACATGCACTTTCAAACTTCAATTTCAAAAGCTGCTTGTGAGAGATC AGAAAGTTATGCCCCAGAGGCTAAGCAAGGGATCAAGAGGCCTTACTCAATGACTAGAAGTGCTATGCATGTTCAAGATCACATAATGGCTGAGAGAAAG CGCAGAGAAAAGCTTAGCCAGCAGTTCATAGCTCTTTCAGCCCTTGTTCCAGGTCTTAAAAAGATGGACAAGGCTTCTGTCCTTGATGGCGCTATGAAGT ACATGAAACAACTCCAAGAACAACTGAAACAACTCCAGGATCAGACCAAGACAAAAACCATGGAATCCGTGGTTCTGCTGAAGAAGTCTAAGCTCTCTGT TGATGATGAATGTACTTCATCTGATGAGAACTTTGATGGCCTCCCTGGCTCACCGCTCCCAGAAATTGAAGCAAGAACAACTGATAAGGATGTACTGATT CGGATCCATTGCAAGAACCAGCAAGGAGTTGGGATTAAAATACTAAGCGAGATAGAGAATCTTCATCTATCAGTAGTCAATAGCAGTGTATTGGTATTTG GGAATTCCACTCTTGACGTAACAGTAATTGCCCAGATGGACAATGATTTCTCATTGACAATGAAGGATCTTGTCAAAAAACTAAGACTGGCTTGTTTGAA GCTCTCATGTGCTATAATACCAAGCTCGTGCGTTCAAGCCTGA
AA sequence Show only first row Show all	>Potri.007G009400.4 pacid=42765967 polypeptide=Potri.007G009400.4.p locus=Potri.007G009400 ID=Potri.007G009400.4.v4.1 annot-version=v4.1 MDIAAGKWLSEMGMDDYKFIHQCNINSLAEFTAQNMATTLLGENLQRSFSSESFSSKPSLMMTRNTTITSTSNGSSSETSQTSIETPGKQQRTNSWNSSI STLHQSPKPPSPIPESFSFNNSAPPPTASSQQFYGNLGRLIKSKDEAASPINMHFQTSISKAACERSESYAPEAKQGIKRPYSMTRSAMHVQDHIMAERK RREKLSQQFIALSALVPGLKKMDKASVLDGAMKYMKQLQEQLKQLQDQTKTKTMESVVLLKKSKLSVDDECTSSDENFDGLPGSPLPEIEARTTDKDVLI RIHCKNQQGVGIKILSEIENLHLSVVNSSVLVFGNSTLDVTVIAQMDNDFSLTMKDLVKKLRLACLKLSCAIIPSSCVQA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.007G009400 [exp]	0	1
AT1G66120			AMP-dependent synthetase and l...		Potri.016G034800 [exp]	1.00	0.9863
AT2G20030			RING/U-box superfamily protein...		Potri.006G239500 [exp]	1.41	0.9781
AT5G22890	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.004G217100 [exp]	4.24	0.9705
AT4G28890			RING/U-box superfamily protein...		Potri.018G085001 [exp]	4.58	0.9689
AT1G21360		GLTP2	glycolipid transfer protein 2 ...		Potri.005G188600 [exp]	5.00	0.9567
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.014G131800 [exp]	6.32	0.9718
AT1G68940			Armadillo/beta-catenin-like re...		Potri.010G136500 [exp]	6.63	0.9751
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	6.70	0.9757
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Potri.003G156200 [exp]	7.14	0.9633
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413800 [exp]	8.06	0.9656

Compare expression of checked genes

Potri.007G009400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.