Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49660 469 / 5e-168 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 374 / 2e-130 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 144 / 6e-41 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 129 / 7e-35 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 132 / 1e-34 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT1G73720 123 / 1e-31 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT5G52820 117 / 1e-29 WD-40 repeat family protein / notchless protein, putative (.1) AT5G08560 116 / 1e-28 transducin family protein / WD-40 repeat family protein (.1.2) AT2G21390 116 / 1e-28 Coatomer, alpha subunit (.1) AT5G50230 112 / 1e-27 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G148500 [exp] 551 / 0 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 383 / 5e-134 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 149 / 8e-43 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 130 / 4e-35 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 120 / 1e-30 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 119 / 4e-30 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.018G020200 [exp] 118 / 3e-29 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G206600 [exp] 116 / 9e-29 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.015G069700 [exp] 115 / 2e-28 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039636 [exp] 512 / 0 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 500 / 4e-180 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 365 / 1e-126 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 364 / 2e-126 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003855 [exp] 147 / 5e-42 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002090 [exp] 147 / 7e-42 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 147 / 5e-40 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 145 / 3e-39 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10012230 [exp] 126 / 1e-33 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 126 / 1e-33 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.007G009500.1 pacid=42764856 polypeptide=Potri.007G009500.1.p locus=Potri.007G009500 ID=Potri.007G009500.1.v4.1 annot-version=v4.1 ATGCCAGACCCAATTGAGTCCTACAAACCCTACACCCTAACCCAAACCCTACAAGGCCACAAATCCTCCATCTCCTCCGTCAAATTCTCCTCCGACGGCC GTTTCCTCGGCTCTTCCTCCGCTGACAAAACCATCAAAACCTATTCCCTCTCCCCCTCTAGTCCTCCCACTTCCCCAATCACTCCTCTCCATGACTTCCA CGGCCACGAACAAGGCGTCTCCGACCTTGCCTTCTCCTCTGATTCCCGCTTCATTGTCTCTGCCTCCGACGACAAAACCCTCCGCCTCTGGGACGTCACA ACTGGGTCCACCATCAAAACCCTTCACGGGCACACCAATTATGTGTTTTGCGTCAGCTTTAACCCAAATTCCAGTATGATTGTTTCGGGTTCTTTTGATG AGACTGTTAGAATTTGGGATGTGAAGAGTGGAAAGTGTTTGAAGGTGTTGCCTGCCCATTCTGATCCAGTTACATGTGTTGATTTTAATAGAGATGGTTC GCTTATTGTATCCAGCAGTTATGATGGCTTGTGTAGGATCTGGGATTCTGGGACTGGTCATTGCATCAAGACTTTGATTGATGATGAAAATCCACCCGTT TCCTTTGTTAAGTTCTCGCCTAATGGAAATTTTATTCTTGTTGGCACTTTGGATAACAATTTGAGGCTTTGGAATTTTTCAACTGGGAAATTTCTGAAGA CATACACTGGGCATGCCAATACAAAATACTGTATTTCGCCCGCCTTTTCCATAACAAATGGAATGTACATTGTTGGCGGTTCTGAGGATAATTGTATGTA CTTGTGGGAGCTTCAAAGCAGGAAAATAGTACAGAAATTGGAAGGTCACACTGATACAGTTATATCAGTAGCATGCCATCCCACCCAGAACATGATCGCA TCCGGTGCAATAGGCAGTGACAAGACTGTGAAGATCTGGACTCAGGAAAAATGA
AA sequence Show only first row Show all	>Potri.007G009500.1 pacid=42764856 polypeptide=Potri.007G009500.1.p locus=Potri.007G009500 ID=Potri.007G009500.1.v4.1 annot-version=v4.1 MPDPIESYKPYTLTQTLQGHKSSISSVKFSSDGRFLGSSSADKTIKTYSLSPSSPPTSPITPLHDFHGHEQGVSDLAFSSDSRFIVSASDDKTLRLWDVT TGSTIKTLHGHTNYVFCVSFNPNSSMIVSGSFDETVRIWDVKSGKCLKVLPAHSDPVTCVDFNRDGSLIVSSSYDGLCRIWDSGTGHCIKTLIDDENPPV SFVKFSPNGNFILVGTLDNNLRLWNFSTGKFLKTYTGHANTKYCISPAFSITNGMYIVGGSEDNCMYLWELQSRKIVQKLEGHTDTVISVACHPTQNMIA SGAIGSDKTVKIWTQEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.007G009500 [exp]	0	1
AT1G71060			Tetratricopeptide repeat (TPR)...		Potri.010G114700 [exp]	2.00	0.9493
AT3G53630			unknown protein		Potri.006G082400 [exp]	3.46	0.9376
AT3G18420			Protein prenylyltransferase su...		Potri.010G098500 [exp]	4.47	0.9392
AT5G59500			protein C-terminal S-isoprenyl...		Potri.009G033700 [exp]	6.00	0.9419
AT4G20020			unknown protein		Potri.003G015100 [exp]	6.24	0.9297
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Potri.008G193800 [exp]	6.32	0.9464
AT1G53345			unknown protein		Potri.015G030300 [exp]	7.28	0.9070
AT3G15000			cobalt ion binding (.1)		Potri.001G393400 [exp]	7.48	0.9195
AT3G15000			cobalt ion binding (.1)		Potri.011G112200 [exp]	8.36	0.9353
AT5G17660			tRNA (guanine-N-7) methyltrans...		Potri.013G070800 [exp]	8.48	0.9413

Compare expression of checked genes

Potri.007G009500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.