Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65685 508 / 9e-175 UDP-Glycosyltransferase superfamily protein (.1.2) AT4G18240 345 / 2e-105 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT1G11720 169 / 3e-43 ATSS3 starch synthase 3 (.1.2) AT3G01180 81 / 2e-15 ATSS2 starch synthase 2 (.1) AT5G24300 69 / 7e-12 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) AT1G32900 57 / 4e-08 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351800 [exp] 311 / 1e-92 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.018G149500 [exp] 218 / 1e-61 AT4G18240 449 / 4e-146 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.004G014100 [exp] 171 / 4e-44 AT1G11720 1460 / 0.0 starch synthase 3 (.1.2) Potri.015G012400 [exp] 91 / 1e-18 AT5G24300 904 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Potri.011G152200 [exp] 73 / 4e-13 AT1G32900 880 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.017G084100 [exp] 72 / 9e-13 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.001G449500 [exp] 61 / 3e-09 AT1G32900 922 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042837 [exp] 332 / 3e-99 AT4G18240 1281 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10038491 [exp] 327 / 1e-98 AT4G18240 1278 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10023319 [exp] 325 / 1e-97 AT4G18240 1303 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10028133 [exp] 314 / 1e-93 AT4G18240 1285 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10006780 [exp] 171 / 8e-44 AT1G11720 1529 / 0.0 starch synthase 3 (.1.2) Lus10020044 [exp] 162 / 4e-41 AT1G11720 1508 / 0.0 starch synthase 3 (.1.2) Lus10022398 [exp] 100 / 1e-21 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10018116 [exp] 99 / 4e-21 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10033014 [exp] 84 / 2e-16 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10015371 [exp] 77 / 2e-14 AT3G01180 928 / 0.0 starch synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF08323 [poplar] [flax] Glyco_transf_5 Starch synthase catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.007G009600.8 pacid=42766554 polypeptide=Potri.007G009600.8.p locus=Potri.007G009600 ID=Potri.007G009600.8.v4.1 annot-version=v4.1 ATGAAAATGGAGTCTGTAATAAACTCTACCATCCTCTCACTCGCTTGCTTCCCAAAATCCAACCCATCAATCCACCACCAAAAAACCGTCAAAGCTCGAC GAACAGTTTGCTGCTCCCTCAGCAGCAGCAGCAGCAGCAGCAGCAAGAATAGTAACAGTGAAGGAGACGCTAATGGCTTACTTAAAGAAGAGGAGGAAGA GAAATATAATGACATTTGGCTGCTTTTTAAAGAAGCTCAGCAGAATATTCTTTACTTAAACAAACTACGCCTTGTGGCTGTTGAAGAGCTCAATAAAGCA AACAGAGAGAAGCAGTTGTTGCTTGATAAAATCCAGCAATTGGAGGCTGTCAACAAATTAGGAAATGAGCAATCATTGTGGCGGGAATTGCTGCTTCGGA TTGACTCAATGGTCCTAACTGGCTTGATTGATTCTGCTGAGGCTTCTGGTATGAGAAAAGCAGTCATGGGTAACAAGTTTAGTGTAGCTCTTGTTTTCTT CGACATCCGGCAGAAAACTGATGCTGAGCTTCTGGCACAACTCCGTCACTTCTCCGTTGGAAGCAGAAAGAATGGTTTTCACATAATCCAAATTTGCACT GAAATGGAACCACTGGTATCGGTTGGATCCTTGTCATCATATGTGACAGGCTTATCAAAGGCACTGCAGAAAAAAGGACACATAGTGGAGGTTATTTTGC CAAAGTATGCATGTCTGGACCTCACTGAAATGCAAGGACTGCGAGAAATTGAGGCAGAGTTGTATTCATATTTTAATGGTCAATTGCATGGAAACAGAAT TTGGACTGGCATCGTCCATGGCATTGGAGTCACTCTCATTCAACCTTTGTACTATTCATCCTTTTTCGATCGTGAAAGGGTATATGGCTACTCAGATGAC TTTGAACGATTTACCTATTTCTCTCGTGCTTCATTGGATTATATAGCAAAATCTGGAAAGCAGCCTGATGTGTTGCATATACACAATTGGGAAACTGCTA TCGTCGGGCCACTCTTTTGGGATATTTTTGTTAAACAGGGGCTTGGAGGTACCAGAGTATTGTTGACATGCCATGGCTTTGACTCACAATGCCTTGAGCA ACCTGATAAGCTAGCACTATGCGGACTTGATCCTGCTAGACTTCACCGTCCTGACCGTTTACAAGATCACACTATGACACATCTTGTCAATATTCTGAAG GGTGGACTTGTGTACTCAAATAAAGTTGTTATGGTGCAATCTATTTATTCAAAAGAAAGGATCATTAATAGTTTCAGTCACGGATTAGAACCGACCTTAG CGATTCACAAGGACAAGTTGCTTGTTTCTCCTTGTGGGTTTGATAACTCCACCTGGGATCCTTCAAAGGACAAATTTCTTCCAAAAAATTATAGTGCAGA TGACCTAAAGGGGAAATCCATTTGCAAAGTTGCATTGCAGCAGCAGCTGGGGTTATCCAAAAATTCATCAACTGTTCTTGTAGGATGCATCTCCACAGAA TCTTTGGATTTTGATCTGAATAACCAGAAGGCAGTTTGGAATGCTACACCAAAGAGTGTCCAGGTTTGTACATGTTTTTGGGATCTTTATTTCTTTGAAG AGAATACAGGGCTTAGTGCTGAATATCGGAGAAACTCCTTACTAGCTGGTGAAATGAGGGTACTTAAGAAAGTGACAAGAACAGTGATTCTCAATTTTCC TTGGCAGCCGCATGAATCATTCATCTTCATGGGAAGCAAAGCGACGAGTGCAGATGGAGCACTGGAATATCTTAAGAAAGAACTAAAGGATGAAACTGTG AGATTCATAAACAAATATGATGAGGCTCTATTGCATCTGATCTTTGCAGGTTCAGACATAATCTTGTGCCAATCTTTTCATGATCCTCTACTCCAAGTGC CTCTGAAAGCTTTGAAATATGGAGCAGCTCCGGTTGCAGTAACATCCAATGAGAACAAATTCAGACATTTTGTAGATCGTGAACAAGAGACCACTAGATT TTCACGGTTCATTAGCTCTACCTTTGGATATTTGTCTTTGAGCCAGGCTGTAGATGAAATTAAGAACAGCCCATCAAAATGGAAGCAGAAGATGGTAGAT GCCATGGCTAAGGACTTCTCATGGAATGCAGAGTGCTGTGACGTTCATGTTTCTGCATACACGGCCCTAAAAAGCTTGTGA
AA sequence Show only first row Show all	>Potri.007G009600.8 pacid=42766554 polypeptide=Potri.007G009600.8.p locus=Potri.007G009600 ID=Potri.007G009600.8.v4.1 annot-version=v4.1 MKMESVINSTILSLACFPKSNPSIHHQKTVKARRTVCCSLSSSSSSSSKNSNSEGDANGLLKEEEEEKYNDIWLLFKEAQQNILYLNKLRLVAVEELNKA NREKQLLLDKIQQLEAVNKLGNEQSLWRELLLRIDSMVLTGLIDSAEASGMRKAVMGNKFSVALVFFDIRQKTDAELLAQLRHFSVGSRKNGFHIIQICT EMEPLVSVGSLSSYVTGLSKALQKKGHIVEVILPKYACLDLTEMQGLREIEAELYSYFNGQLHGNRIWTGIVHGIGVTLIQPLYYSSFFDRERVYGYSDD FERFTYFSRASLDYIAKSGKQPDVLHIHNWETAIVGPLFWDIFVKQGLGGTRVLLTCHGFDSQCLEQPDKLALCGLDPARLHRPDRLQDHTMTHLVNILK GGLVYSNKVVMVQSIYSKERIINSFSHGLEPTLAIHKDKLLVSPCGFDNSTWDPSKDKFLPKNYSADDLKGKSICKVALQQQLGLSKNSSTVLVGCISTE SLDFDLNNQKAVWNATPKSVQVCTCFWDLYFFEENTGLSAEYRRNSLLAGEMRVLKKVTRTVILNFPWQPHESFIFMGSKATSADGALEYLKKELKDETV RFINKYDEALLHLIFAGSDIILCQSFHDPLLQVPLKALKYGAAPVAVTSNENKFRHFVDREQETTRFSRFISSTFGYLSLSQAVDEIKNSPSKWKQKMVD AMAKDFSWNAECCDVHVSAYTALKSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65685			UDP-Glycosyltransferase superf...		Potri.007G009600 [exp]	0	1
AT1G21650		SECA2	Preprotein translocase SecA fa...		Potri.002G078000 [exp]	1.00	0.9301
AT1G73210			Protein of unknown function (D...		Potri.004G068700 [exp]	2.44	0.9009
AT5G62620			Galactosyltransferase family p...		Potri.012G072400 [exp]	3.46	0.9010
AT4G37560			Acetamidase/Formamidase family...		Potri.005G145400 [exp]	3.74	0.8741
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Potri.010G094800 [exp]	3.87	0.8597
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.001G132600 [exp]	4.79	0.8455
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166932 [exp]	7.34	0.8752
AT1G28320		DEG15	protease-related (.1)		Potri.011G056100 [exp]	7.48	0.8905
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G154300 [exp]	8.94	0.8787
AT5G37930			Protein with RING/U-box and TR...		Potri.004G091800 [exp]	10.81	0.8350

Compare expression of checked genes

Potri.007G009600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.