Plant FIBer expression Database

Potri.007G009700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G22720 165 / 3e-45 SPT2 chromatin protein (.1.2.3)
AT4G37860 103 / 2e-24 SPT2 chromatin protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G148700
[exp]
501 / 2e-176 AT2G22720 177 / 1e-49 SPT2 chromatin protein (.1.2.3)
Potri.001G257300
[exp]
82 / 8e-17 AT4G37860 108 / 1e-26 SPT2 chromatin protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019243
[exp]
221 / 2e-66 AT2G22720 140 / 1e-35 SPT2 chromatin protein (.1.2.3)
Lus10011581
[exp]
208 / 2e-61 AT2G22720 139 / 3e-35 SPT2 chromatin protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08243 SPT2 SPT2 chromatin protein
Representative CDS sequence
>Potri.007G009700.3 pacid=42766199 polypeptide=Potri.007G009700.3.p locus=Potri.007G009700 ID=Potri.007G009700.3.v4.1 annot-version=v4.1
ATGCGAGGATATGATAGAGAGGAAGATGAATATTATGATGAATATGAGGAGGAAGGTGAAGAGCAAGCGGAGGAGGAGTATGAAGAGGAAGAAGAACGAA
AGCCCACTGTAGAGGAAGTGGAATATCTTGAATTAAGGGAGCGGATTAAAGAACAAATTAGAAAGAAGATGCGGAAGGAAAGTGGTTCTACTCTTTCCAA
ATCCCAAGAGAAGAAAAAACTCCCGTCTGATAATTATGGTTCATTCTTTGGCCCTTCTCAACCAGTTATTTCTCAAAGAGTAATTCAAGAAAGCAAGTCA
ATACTAGAAAACCAACATTTGGCTCTCAGAGTTCCAAACGCCCAACATACTAACAAAAAGAGCTCCTCGTCAACGGCTACAGGTTTAAAAAACAGAGTAC
ATGGACTTGTACCGAAAGTAAAGAATGAGGTAAAAACAAAAGTCCAAAAACTCAAGGATACGAGAGATTATTCTTTTTTGTTAACGGATGATGCAGAGCT
CCCAGCTCCTACAAAAGAGCCTGCCCCCCGAAATGTCTCTGCTCCTAATTCTGAGGCGAGATCTGCTCAAGTTCCACAAAAGATCAAACAAGCTTCCAGC
AATAGTGGCAGAAATATTCATGGCATTCGTGAAGAAAGGAAGCCAGTTTTCAGGAATGGCCAAATGCATTCTAAAGTAGGGTCACAAAAGCCAACATCTG
CTAATAAACCTGATGCAACATCGATAAACTCCAAAAGGCAGCTAGGTAGCAACAATGGGACTGGGCCTGGCCGGCCTGCAGGGCCAAAATTCTTGCCTTC
AAAGACACCTGCTTCCTCCATCATGCAGAAGAAGGCTTCATCACCAAGTGCTAAGAAAATCCTGCCTGCCATGCACAAATCTCTACCTTCAAACCCTTCA
AAGTCATCTGTTCCAAAGCAACACTGGGAACAGAGAAAAGGATTACAAGAACCCAATAAGGCTAGACCGATACCAAAACAGCCACTGTCATCTTTAAAAT
CTCAGCAGATAAATAAGCCAATCAAGCAAGTTTCGTCTCATGCATCGTTACAAGATAACCGCCCCAAGAAAAAGCCTGTCAGACCGTTTCCTGATGCAGG
CTCTGATGATGAGGATGCTTTCAGTATGCTCAGAAAATTAATTGGAAATAAAAACCGTGGTAACTATGATGATGATGATGATGATAGTGACATGGAGGCA
AATTTCGATGACATCATGAAGGAAGAGAGGAGAAGTGCTCGAATCGCACGAGAGGAGGATGAAGAGCAACTCCGATTGATAGAAGAGGAGGAGCGGCGAG
AACGGGAGAGAAAGCTGGCAAAGAAGCGCAAGCTAAGTAATCGATGA
AA sequence
>Potri.007G009700.3 pacid=42766199 polypeptide=Potri.007G009700.3.p locus=Potri.007G009700 ID=Potri.007G009700.3.v4.1 annot-version=v4.1
MRGYDREEDEYYDEYEEEGEEQAEEEYEEEEERKPTVEEVEYLELRERIKEQIRKKMRKESGSTLSKSQEKKKLPSDNYGSFFGPSQPVISQRVIQESKS
ILENQHLALRVPNAQHTNKKSSSSTATGLKNRVHGLVPKVKNEVKTKVQKLKDTRDYSFLLTDDAELPAPTKEPAPRNVSAPNSEARSAQVPQKIKQASS
NSGRNIHGIREERKPVFRNGQMHSKVGSQKPTSANKPDATSINSKRQLGSNNGTGPGRPAGPKFLPSKTPASSIMQKKASSPSAKKILPAMHKSLPSNPS
KSSVPKQHWEQRKGLQEPNKARPIPKQPLSSLKSQQINKPIKQVSSHASLQDNRPKKKPVRPFPDAGSDDEDAFSMLRKLIGNKNRGNYDDDDDDSDMEA
NFDDIMKEERRSARIAREEDEEQLRLIEEEERRERERKLAKKRKLSNR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G22720 SPT2 chromatin protein (.1.2.3... Potri.007G009700
[exp]
0 1
AT1G19480 DNA glycosylase superfamily pr... Potri.002G035300
[exp]
3.46 0.8678
AT2G44600 unknown protein Potri.002G135400
[exp]
4.00 0.8352
AT3G14010 CID4 CTC-interacting domain 4 (.1.2... Potri.003G063000
[exp]
6.92 0.8245
AT2G44730 Trihelix Alcohol dehydrogenase transcri... Potri.002G139500
[exp]
9.32 0.8496
AT1G27750 nucleic acid binding (.1) Potri.014G017000
[exp]
14.07 0.8503
AT1G21700 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3... Potri.005G180800
[exp]
22.80 0.8333 CHB904,CHB4.1
AT5G17510 unknown protein Potri.013G076800
[exp]
24.49 0.8122
AT5G52980 unknown protein Potri.003G093800
[exp]
29.84 0.7036
AT4G02560 HD LD luminidependens, Homeodomain-l... Potri.002G209216
[exp]
32.93 0.8261
AT3G13300 VCS VARICOSE, Transducin/WD40 repe... Potri.001G469500
[exp]
33.54 0.8244 Pt-VCS.1

Potri.007G009700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.