Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09880 519 / 8e-180 Splicing factor, CC1-like (.1) AT2G16940 421 / 7e-141 Splicing factor, CC1-like (.1.2.3) AT3G14100 72 / 4e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G54900 70 / 1e-12 ATRBP45A RNA-binding protein 45A (.1) AT3G52380 69 / 2e-12 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT2G37220 68 / 2e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G16280 69 / 6e-12 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT4G27000 68 / 6e-12 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 67 / 1e-11 UBP1A oligouridylate-binding protein 1A (.1.2) AT1G17370 67 / 2e-11 UBP1B oligouridylate binding protein 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G148100 [exp] 652 / 0 AT5G09880 553 / 0.0 Splicing factor, CC1-like (.1) Potri.004G177000 [exp] 476 / 2e-161 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.009G137200 [exp] 469 / 3e-159 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.003G149600 [exp] 74 / 1e-13 AT4G19610 646 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Potri.007G028300 [exp] 72 / 2e-13 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G090700 [exp] 69 / 8e-13 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G127200 [exp] 67 / 4e-12 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G229732 [exp] 69 / 5e-12 AT4G24270 860 / 0.0 EMBRYO DEFECTIVE 140 (.1.2) Potri.001G319900 [exp] 64 / 6e-12 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002093 [exp] 562 / 0 AT5G09880 600 / 0.0 Splicing factor, CC1-like (.1) Lus10000826 [exp] 555 / 0 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1) Lus10034466 [exp] 424 / 6e-141 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10025075 [exp] 413 / 3e-137 AT2G16940 565 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10027830 [exp] 390 / 5e-129 AT2G16940 553 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10005059 [exp] 385 / 5e-127 AT2G16940 534 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10029372 [exp] 75 / 3e-14 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10026514 [exp] 71 / 3e-13 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10041728 [exp] 71 / 6e-13 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10018277 [exp] 72 / 9e-13 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] RRM PF13893 [poplar] [flax] RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF15519 [poplar] [flax] RBM39linker linker between RRM2 and RRM3 domains in RBM39 protein
Representative CDS sequence Show only first row Show all	>Potri.007G009800.1 pacid=42765610 polypeptide=Potri.007G009800.1.p locus=Potri.007G009800 ID=Potri.007G009800.1.v4.1 annot-version=v4.1 ATGGAATTCGACGAGATTGAGTATCTGGAGAAAACCGTAGAGGAAGCGGAAGATCGAGACGATACGAGGAAGAAGAACAGCAGTAGTAGCAAAAAGAGAA ATGGAACCGAGAGAAGTTACAGGAAGCGAGACGTCGATGATGAAGATATCGACAACGACGAGGACCGAAAGGCAAAGAAATTGAAAGCTGAGGACGAGAA TGGTCGCGATCGCCACCACCGGAGAGACCGAGATTTAGATAGAGATAGAAGTAGCAGACAGAAAGATAGAGAGAGAGAGAGGAGAGAGAAAGATAAGGAG AAGGAGAGAGAGAGGAGAGAGAAGGAGAAGGAGAGGGAGAGGAGAGAGAAGGAGAAGGAGAGGGAAAAGAGAGAGAGGGGGGGAGAGGAGGAGAGAGAGG AGAGAGAGAAAGATAAGGAGAAGGAGATAGAGAGGAGAGAGAGGGAGAGGGAAAGGAGAGAGAGAGGGGGAGAGGAGGAGAGAGAGAAAGATAAGGAGAA GGAGATAGAGAGGAGAGAGAAGGAGAGGGAGAGGGAGAGGGAAAGGAGAGAGAGGGGGGGAGAGGAGGAGAGAGAGAGGAGAGAGCGCAGCAGGAGCAGG TCGAGGAGGTATGAAAGTGATAATCGTGAGAGGGAGAGGGAGAGAGAGATTGATACGAGAGAAAGCAGGAGATTTAAAGAAAAGAAAGAAGTGGTGGAGC CTGAAGCTGATCCAGAAAGGGACCAAAGAACTGTTTTTGTGTACCAGATGCCTTTGAAGGCGACAGAGAGAGATGTGTATGAATTCTTCTCGAAAGCAGG CAAGGTCAGGGATGTTCGATTGATAATGGACCGAAATTCAAGGCGGTCAAAAGGAGTTGGGTATGTTGAATTCTATGATGCAATGTCTGTGCCAATGGCA ATAACTCTTTCAGGTCAACTGCTTCTTGGACAACCTGTAATGGTTAAGCCTTCTGAGGCTGAAAAGAACCTCGTTCAGCCTAGTGCTTCAGGCGGTGGCA CAGGTGGTGTTACTGGACCATTTGGAGCAGTTGACAGAAAACTGTATGTTGGGAATTTGCATTTTAACATGACAGAAATGCAGCTTAGACAGCTTTTTGA ACCATTTGGTATTGTGGAGCTTGTGCAACTGCCTCTTGACCTTGAGACAGGACAATGCAAAGGTTTCGGATTTGTTCAATTTACTCAACTTGAAAATGCT AAGGCTGCACAAAGTGCTTTGAATGGAAAACTGGAGATTGCGGGTCGAACTATTAAGGTTTCATCTGTTACAGAACATGGCGGACAGCAAGACAGTGGAG TAAAATCTGCTGACTTCGACGATGATGATGGGGGTGGATTGGCTTTGAATGCTCAATCAAGAGCATTGCTTATGCAGAAGCTGGATAGGACTGGCACTGC CACAAGTATTGCAGGCTCTCTTGGAGTACCTTTGCTAAATGGATCAGCTCCAAATCAACAAGCCATTAGCTTGCCTGTCAATGGGCAAACTAATATTGGA GCAGCAGCATTTCCGGCACTAGTTTTACCTTCCCCTGCTTATGAATCTATTGGGCAACCCAGCGAGTGTCTATTGCTGAAGAATATGTTTGATCCAGCCA CTGAGACGGAACCAGATTTTGATTTGGATATTAAAGAGGATGTAGAAGAAGAATGTTCAAGATACGGTCAGGTGAAACATATTTGGGTGGACAAGAATAG TGCTGGGCACGTGTATCTACAGTTCGACAGCATGGAAGCAGCAGCAAGAGCTCAGCGTGCAATGCATATGAGATGGTTTGCGCGCAGGTCAATTTTAGCA ATTTTCATGCCAACCCGTGAATATGAAGCAAGATTCCAAAATGGAGCTTGA
AA sequence Show only first row Show all	>Potri.007G009800.1 pacid=42765610 polypeptide=Potri.007G009800.1.p locus=Potri.007G009800 ID=Potri.007G009800.1.v4.1 annot-version=v4.1 MEFDEIEYLEKTVEEAEDRDDTRKKNSSSSKKRNGTERSYRKRDVDDEDIDNDEDRKAKKLKAEDENGRDRHHRRDRDLDRDRSSRQKDRERERREKDKE KERERREKEKERERREKEKEREKRERGGEEEREEREKDKEKEIERRERERERRERGGEEEREKDKEKEIERREKERERERERRERGGEEERERRERSRSR SRRYESDNREREREREIDTRESRRFKEKKEVVEPEADPERDQRTVFVYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMA ITLSGQLLLGQPVMVKPSEAEKNLVQPSASGGGTGGVTGPFGAVDRKLYVGNLHFNMTEMQLRQLFEPFGIVELVQLPLDLETGQCKGFGFVQFTQLENA KAAQSALNGKLEIAGRTIKVSSVTEHGGQQDSGVKSADFDDDDGGGLALNAQSRALLMQKLDRTGTATSIAGSLGVPLLNGSAPNQQAISLPVNGQTNIG AAAFPALVLPSPAYESIGQPSECLLLKNMFDPATETEPDFDLDIKEDVEEECSRYGQVKHIWVDKNSAGHVYLQFDSMEAAARAQRAMHMRWFARRSILA IFMPTREYEARFQNGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09880			Splicing factor, CC1-like (.1)		Potri.007G009800 [exp]	0	1
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Potri.008G221500 [exp]	3.46	0.8551	Pt-ESD4.1
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Potri.010G166100 [exp]	6.78	0.9014
					Potri.014G015200 [exp]	7.74	0.8865
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.001G001700 [exp]	8.48	0.8615
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Potri.003G200000 [exp]	9.64	0.8181
AT1G10890			unknown protein		Potri.001G211000 [exp]	11.40	0.8352
AT4G26630			DEK domain-containing chromati...		Potri.011G093200 [exp]	11.83	0.8784
AT1G20920			P-loop containing nucleoside t...		Potri.002G003600 [exp]	17.14	0.8659
					Potri.001G306100 [exp]	18.76	0.8425
AT5G43490			unknown protein		Potri.017G058600 [exp]	21.56	0.8739

Compare expression of checked genes

Potri.007G009800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.