Plant FIBer expression Database

Potri.007G010000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G167800
[exp]
498 / 5e-173 ND /
Potri.007G089400
[exp]
471 / 5e-162 ND /
Potri.005G078500
[exp]
460 / 3e-158 ND /
Potri.002G093000
[exp]
209 / 5e-64 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041110
[exp]
480 / 7e-166 ND /
Lus10036436
[exp]
454 / 1e-155 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF00150 Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence
>Potri.007G010000.1 pacid=42766019 polypeptide=Potri.007G010000.1.p locus=Potri.007G010000 ID=Potri.007G010000.1.v4.1 annot-version=v4.1
ATGGAGCTTGGTTTTAGCAAATGGGTTCTTGCGTTTGCACTTTCTTCATGGCTGCTGTTTTCCAGAGCATACTCAGTGGAGGGATTAAGAGGCAATTCTA
AAGTCCGGGGAGTGAACTTGGGAGGTTGGCTGGTGATTGAAGGTTGGATCAAGCCATCACTCTTTGATGCCATTCCCAACGGAGACATGCTTGATGGTAC
TGGGGTTCGTTTCATGTCAGTGTCGTCGCACAAGTATGTGAGTGCAGAGAATGGAGGTGGTATGGGTGTTACAGTGTATAGAGATGTTGCTTTTTCGTGG
GAAACTTTTAAGTTGTGGAGAGTTTCTGCATCTGAATTTCAGCTTCGCACCTCTCAAGGCTATTTTCTAGCATGTTATGGTGAAGGATGCTCCATTTCTG
CCACAGCAAACTCACCTTCAGAAGGGGAAATATTTTATATTGAAAGGAATAATAACAATCAAGTTCACATAAAACTTATTACCGGGGCTTATCTGCAAGT
TACAGTAGGAAATCTGCTGACAGCAGACTATCCAGGGAAACCAGGATGGGATGATAATGCAGCTACATTCGAAATGATGATAGTGGCAAATGACTTGCAC
GGAGATTACCAGCTTGCAAATGGATATGGACGTCATCAGGCCAAGGAGGTTCTTAAGAAACACAGAAATAGTTTTATTACTATGGACGATTTCAGTTTTC
TATATAGACGTGGGATAAATACTGTGAGGATTCCTGTTGGCTGGTGGATTGCTTTCGATCCTGATCCACCTGCTCCTTTTATTGGGGGATGTTTGGAAGC
TCTAGATAATGCTTTCTCATGGGCACAAGCCTATAATATAAAATGTGTAATTGACCTTCATGCGGCTCCTGGCTCCCAAAATGGGGCGGAACATAGTGCT
AGTAGAGATGGTACAACAGGCTGGCCTTCCTCTCCAGATTATGTCTCAAAGACATTGGATGTTATTGACTTTTTAGCTTCCAGATATGGAAGACATCCTG
CTTTGCTGGGAATTGAGCTTTTAAATGAACCATCTGCCTCCTTGGTTCCCATGGAAGTTTTAGTTCCATATTACAAGCAAGGCTATGAAATTGTTCGAAA
ATACTCCTCTACGGCTTATGTAATAATTTGCCAAAGAATTGGCAATGCAGATCCGATAGAACTTTACCAGGCGAATATAAGCTCTCATAATTTAGTTGTG
GATTTGCATTTTTACAATCTTTTTGATTCTTACTTTGTTAATATGAGCACTATGGATAACATAGATTTTGTATACAAGAGCAGGGCAGCTCAATTACAGG
CTCTGAACAGTGCAAATGGCCCGCTTGTTTTTGTTGGGGAATGGGTGAATGAGTGGAGCGTGACAACTGCATCTCAGACAGATTATCAAGATTTTGGTAG
AGCACAACTTGAGGTTTATAATGCAGCTTCCTTTGGATGGGCATATTGGACTCTCAAAAATGACAGAAAGCACTGGGATTTTGAATGGAACATTAGGAAC
AATTATCTCCAACTGGGTAATTCAACTACCAGGAAAATTTATGACAAGTTAGTATTGCTTGGATTGATTTCTGTCTGGATCTTTCTGCTTTGTATACTAT
AA
AA sequence
>Potri.007G010000.1 pacid=42766019 polypeptide=Potri.007G010000.1.p locus=Potri.007G010000 ID=Potri.007G010000.1.v4.1 annot-version=v4.1
MELGFSKWVLAFALSSWLLFSRAYSVEGLRGNSKVRGVNLGGWLVIEGWIKPSLFDAIPNGDMLDGTGVRFMSVSSHKYVSAENGGGMGVTVYRDVAFSW
ETFKLWRVSASEFQLRTSQGYFLACYGEGCSISATANSPSEGEIFYIERNNNNQVHIKLITGAYLQVTVGNLLTADYPGKPGWDDNAATFEMMIVANDLH
GDYQLANGYGRHQAKEVLKKHRNSFITMDDFSFLYRRGINTVRIPVGWWIAFDPDPPAPFIGGCLEALDNAFSWAQAYNIKCVIDLHAAPGSQNGAEHSA
SRDGTTGWPSSPDYVSKTLDVIDFLASRYGRHPALLGIELLNEPSASLVPMEVLVPYYKQGYEIVRKYSSTAYVIICQRIGNADPIELYQANISSHNLVV
DLHFYNLFDSYFVNMSTMDNIDFVYKSRAAQLQALNSANGPLVFVGEWVNEWSVTTASQTDYQDFGRAQLEVYNAASFGWAYWTLKNDRKHWDFEWNIRN
NYLQLGNSTTRKIYDKLVLLGLISVWIFLLCIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.007G010000
[exp]
0 1
AT1G32790 CID11 CTC-interacting domain 11 (.1.... Potri.001G448800
[exp]
1.00 0.9587
AT5G44010 unknown protein Potri.014G192200
[exp]
2.00 0.9423
AT5G40270 HD domain-containing metal-dep... Potri.009G147800
[exp]
3.46 0.9481
AT5G53860 EMB64, EMB2737 EMBRYO DEFECTIVE 64, embryo de... Potri.001G398900
[exp]
3.87 0.9330
AT1G43770 RING/FYVE/PHD zinc finger supe... Potri.007G110400
[exp]
4.12 0.9155
AT2G35060 KUP11 K+ uptake permease 11, K+ upta... Potri.001G123700
[exp]
5.00 0.9077 Pt-KUP10.1
AT4G02550 unknown protein Potri.011G163248
[exp]
5.47 0.9307
AT3G19180 ATCDP1, ARC6H, ... A. THALIANA CHLOROPLAST DIVISI... Potri.015G028101
[exp]
5.47 0.9171
AT4G18465 RNA helicase family protein (.... Potri.004G052700
[exp]
6.48 0.9133
AT1G66680 AR401 S-adenosyl-L-methionine-depend... Potri.012G068550
[exp]
6.92 0.9169

Potri.007G010000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.