Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65380 695 / 0 MATE efflux family protein (.1) AT5G44050 627 / 0 MATE efflux family protein (.1) AT5G10420 617 / 0 MATE efflux family protein (.1) AT1G33100 454 / 9e-157 MATE efflux family protein (.1) AT1G33110 451 / 2e-155 MATE efflux family protein (.1.2) AT1G47530 444 / 6e-153 MATE efflux family protein (.1) AT1G33080 439 / 1e-150 MATE efflux family protein (.1.2) AT1G33090 435 / 5e-149 MATE efflux family protein (.1) AT3G26590 435 / 6e-149 MATE efflux family protein (.1) AT5G38030 434 / 1e-148 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G102100 [exp] 651 / 0 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 601 / 0 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.013G069700 [exp] 473 / 2e-164 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.002G102000 [exp] 468 / 8e-164 AT5G65380 437 / 7e-152 MATE efflux family protein (.1) Potri.019G063500 [exp] 440 / 1e-150 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.013G069600 [exp] 439 / 1e-150 AT3G03620 533 / 0.0 MATE efflux family protein (.1) Potri.015G139400 [exp] 437 / 4e-150 AT3G03620 548 / 0.0 MATE efflux family protein (.1) Potri.013G069400 [exp] 437 / 6e-150 AT3G03620 527 / 0.0 MATE efflux family protein (.1) Potri.015G139500 [exp] 430 / 2e-146 AT3G03620 521 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002645 [exp] 777 / 0 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 771 / 0 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10024945 [exp] 658 / 0 AT5G65380 651 / 0.0 MATE efflux family protein (.1) Lus10015903 [exp] 647 / 0 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10020952 [exp] 635 / 0 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10020951 [exp] 513 / 1e-179 AT5G65380 543 / 0.0 MATE efflux family protein (.1) Lus10003869 [exp] 472 / 1e-163 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10042130 [exp] 460 / 3e-159 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 441 / 4e-151 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 438 / 6e-150 AT3G26590 664 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.007G010200.2 pacid=42764884 polypeptide=Potri.007G010200.2.p locus=Potri.007G010200 ID=Potri.007G010200.2.v4.1 annot-version=v4.1 ATGTCTAGTAACGGTGCCGTCCTGGATTACCTGGAAGCAAAGGTTCCCTTGTTAGAGGAGAAAACTAAACGAGATGATGATATTGTTGTTCAAGATCTTG CATGCAGGGTTGGGGTTGAATCAAAGAAGCTATGGCATATAGTAGGTCCAGCAATCTTTAGCCGTCTCACCTCTTACTCCATGCTTGTCATCACCCAAGC TTTTGCCGGTCATTTGGGTGACCTTGAGCTTGCTGGTATCTCCATTGCCAATAATGTAATTGTTGGCTTCGACTTTGGCCTCTTGTTGGGGATGGCAAGT GCGTTAGAGACACTCTGTGGGCAAGCTTTTGGAGCAAAAAAGTACTATATGTTGGGAGTATACATGCAACGTTCATGGATTGTATTGTTCTTATGTTGTA TTTTGCTTTTGCCCCTCTACCTCTTTGCCTCTCCAGTCTTGAAGCTACTTGGCCAACCTAATGATATAGCAGAACTTTCAGGGAAAGCTGCTGTGTGGAT GATACCACTTCACTTTAGCTTTGCCTTTCAGTTTCCCTTGCAGAGATTCTTGCAGAGCCAGCTTAAGAACATGGTAATTGCATGGGTGTCTTTTGTAGCT CTGGTGGTTCATATCTTTGTCAGTTGGCTTCTTGTGTATAAGCTTCAGCTTGGAGTTGCTGGGACAGCCATGACTTTGAATTTTTCTTGGTGGGTTTTGG TTTTTGGTCTTCTAGGCTACACCATTTGTGGTGGCTGTCCTCTTACATGGACTGGTTTCTCCACCGAAGCCTTTTCTGGCCTTTGGGAATTCACCAAACT CTCCGCTGCTTCTGGGGTCATGCTCTGCTTGGAGAATTGGTATTATAGAATCCTCATCTTAATGACTGGGAATCTAAAAAATGCAGAAATTGCTGTGGAT GCTTTGTCTATATGCATGACCATAAATGGCTGGGAGATGATGATTCCTCTTGCTTTCTTTGCAGGAACCGGAGTAAGGGTTGCAAATGAGCTTGGAGCTG GGAATGGGAAGGGTGCCAAGTTTGCTACAATTGTGTCAGTGACAACATCAGTTATCATTGGCCTTGTCTTCTGGCTACTTATAATGTTCTTCCACGACAA GTTAACCTGGATATTTACTTCAAGCGAACCTGTTCTTGAAGCAGTTAACAAGCTCTCAATCCTCTTAGCATTCACAGTCTTGCTCAACAGTGTTCAGCCA GTTCTCTCAGGGGTTGCTGTTGGCTCAGGATGGCAAAAGTACGTGGCATACATAAACCTAGGTTGCTACTATGCTATTGGAGTTCCTCTTGGATTCCTAA TGGGATGGTTCTTTCACCAAGGAGTTATGGGAATTTGGGCTGGGATGATTTTCGGAGGGACAGCAGTTCAAACACTAATACTGGCCATCATTACTATTCG ATGCGACTGGGAAAAGGAGGCAGAGAAAGCAAGCCAGCATGTATTGAAGTGGTCAGAAGCAATCTAA
AA sequence Show only first row Show all	>Potri.007G010200.2 pacid=42764884 polypeptide=Potri.007G010200.2.p locus=Potri.007G010200 ID=Potri.007G010200.2.v4.1 annot-version=v4.1 MSSNGAVLDYLEAKVPLLEEKTKRDDDIVVQDLACRVGVESKKLWHIVGPAIFSRLTSYSMLVITQAFAGHLGDLELAGISIANNVIVGFDFGLLLGMAS ALETLCGQAFGAKKYYMLGVYMQRSWIVLFLCCILLLPLYLFASPVLKLLGQPNDIAELSGKAAVWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSFVA LVVHIFVSWLLVYKLQLGVAGTAMTLNFSWWVLVFGLLGYTICGGCPLTWTGFSTEAFSGLWEFTKLSAASGVMLCLENWYYRILILMTGNLKNAEIAVD ALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVTTSVIIGLVFWLLIMFFHDKLTWIFTSSEPVLEAVNKLSILLAFTVLLNSVQP VLSGVAVGSGWQKYVAYINLGCYYAIGVPLGFLMGWFFHQGVMGIWAGMIFGGTAVQTLILAIITIRCDWEKEAEKASQHVLKWSEAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65380			MATE efflux family protein (.1...		Potri.007G010200 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Potri.007G125800 [exp]	2.23	0.9669
AT3G19900			unknown protein		Potri.010G169700 [exp]	3.16	0.9579
AT4G31980			unknown protein		Potri.001G046000 [exp]	3.87	0.9510
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Potri.011G140750 [exp]	4.58	0.9570
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043700 [exp]	6.63	0.9559
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.004G176750 [exp]	14.28	0.9501
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Potri.004G092100 [exp]	17.74	0.9428
AT3G27925		DEGP, DegP1, DE...	DegP protease 1 (.1)		Potri.001G348800 [exp]	19.07	0.9429
AT1G66920			Protein kinase superfamily pro...		Potri.007G125900 [exp]	19.62	0.9294
AT3G19660			unknown protein		Potri.017G109900 [exp]	20.07	0.9300

Compare expression of checked genes

Potri.007G010200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.