Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22480 816 / 0 PFK5 phosphofructokinase 5 (.1) AT5G56630 357 / 6e-118 PFK7 phosphofructokinase 7 (.1) AT4G26270 355 / 2e-117 PFK3 phosphofructokinase 3 (.1) AT4G29220 353 / 6e-117 PFK1 phosphofructokinase 1 (.1) AT5G61580 353 / 7e-116 PFK4 phosphofructokinase 4 (.1.2) AT4G32840 348 / 8e-115 PFK6 phosphofructokinase 6 (.1) AT5G47810 320 / 2e-104 PFK2 phosphofructokinase 2 (.1) AT4G04040 43 / 0.0005 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) AT1G12000 43 / 0.0006 Phosphofructokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G069200 [exp] 360 / 2e-119 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 353 / 2e-116 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2) Potri.006G152600 [exp] 354 / 4e-116 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.016G002700 [exp] 348 / 6e-115 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.006G235066 [exp] 180 / 2e-53 AT4G26270 331 / 7e-113 phosphofructokinase 3 (.1) Potri.006G235132 [exp] 153 / 4e-43 AT4G26270 399 / 3e-139 phosphofructokinase 3 (.1) Potri.001G079501 [exp] 125 / 3e-33 AT5G61580 235 / 2e-75 phosphofructokinase 4 (.1.2) Potri.004G003800 [exp] 44 / 0.0003 AT1G12000 946 / 0.0 Phosphofructokinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002648 [exp] 835 / 0 AT2G22480 868 / 0.0 phosphofructokinase 5 (.1) Lus10012738 [exp] 833 / 0 AT2G22480 869 / 0.0 phosphofructokinase 5 (.1) Lus10011143 [exp] 361 / 9e-119 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10035001 [exp] 358 / 6e-118 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1) Lus10043044 [exp] 362 / 2e-117 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10006032 [exp] 353 / 4e-117 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10005488 [exp] 355 / 5e-117 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10008812 [exp] 323 / 3e-105 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10039993 [exp] 122 / 2e-32 AT5G47810 236 / 5e-77 phosphofructokinase 2 (.1) Lus10039992 [exp] 40 / 0.0002 AT5G47810 89 / 6e-23 phosphofructokinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [poplar] [flax] PFK PF00365 [poplar] [flax] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Potri.007G010300.1 pacid=42765261 polypeptide=Potri.007G010300.1.p locus=Potri.007G010300 ID=Potri.007G010300.1.v4.1 annot-version=v4.1 ATGGACTCTGTGTCGCATGCCGCCGTGATCAGCAGCTCCAAGCTCAGTTATGGTGGTCGCGTCTCTTTCAACAAGGACAAAAACCCACTACTACGCTCAA GTGTTGTGTCTTTACGAAACTGGAGGGCCCCATCAAGAAATCTTGGCGTTTTGGCAGCACAGATTGGGAACAAAGAGATTGATTTCAGCGATCCGGATTG GAAAACAAATTACCAAAGAGATTTTGAGAGACGGTTTAACATTCCTCATATCACTGATATCTTTCCTGATGCAGACCCAATTCCCTCTACGTTTTGTCTA AAGATGAGGACTCCAGTCATGGAAGATTTCGCTGGTGGATATCCATCTGATGAGGAATGGCATGGATACATAAATAAAAATGACAGGGTGCTTCTTAAGG TCATACATTACTCATCACCTACCTCTGCTGGAGCTGAGTGCATTGATCCCAATTGTACTTGGGTCGAACAATGGGTCCATAGAGCTGGGCCTCGGGAAAA AATATACTTCAAACCAGAAGAAGTAAAGGCAGCAATTGTTACTTGTGGTGGCTTATGCCCTGGTCTCAATGATGTCATCCGACAGATTGTCATCACACTT GAAATCTATGGTGTCAAAAAGATAGTTGGTATCCCCTTTGGTTATCGTGGATTTTCTGATGAAGGCCTGAGTGAAATGCCGCTATCCAGGAAAGTGGTGC AGAATGTTCACCTTTCTGGTGGAAGCTTGTTAGGAGTTTCACGCGGCGGACCCAGTGTTAGTGACATTGTGGACAGCATGGAGGAAAGAGGGATCAACAT GCTCTTTGTGTTAGGTGGGAATGGTACCCATGCTGGAGCCAATGCAATACATAATGAGTGCCGTAGACGAAGGATGAGGGTGGCTGTAGTTGGCGTGCCA AAAACCATAGACAATGATATTTTGATGATGGACAAAACTTTTGGTTTTGACACTGCTGTTGAAGAAGCGCAGAGAGCAATAAATTCTGCCTACATTGAGG CACATAGTGCTTATCATGGTATTGGCATAGTGAAATTGATGGGTCGTAACAGTGGATTTATAGCAATGCATGCATCGCTAGCTAGTGGACAAATCGACAT ATGTTTGATTCCAGAGGTACCTTTTCATTTACATGGACCTCTTGGTGTTTTGAGGCATCTCAAATTCCTAATTGAGACAAAGGGATCGGCTGTCTTATGT GTAGCAGAAGGAGCTGGACAGAATTTTCTTGGGAGAACTAATGCTACTGATGCATCTGGAAACACTGTACTCGGAGACTTTGGTGTGCATATTCAACAGG AGACAAAAAAATATTTTAAGGAGATTGGCGTTCATGCTGATGTAAAGTATATTGACCCAACATACATGATACGTGCATGCCGTGCAAATGCATCAGATGG AATTTTATGTACTGTTCTCGGACAAAATGCAGTTCATGGTGCATTTGCTGGATATAGTGGAATCACTGTAGGAATATGCAACACTCATTATGTTTACTTC CCCATCCCCGAAGTCATTTCTTATCCCAGGGCTGTGGATCCTAACAGCCGCATGTGGCATCGTTGCTTAACTTCAACCGGCCAGCCTGACTTTGTCTAA
AA sequence Show only first row Show all	>Potri.007G010300.1 pacid=42765261 polypeptide=Potri.007G010300.1.p locus=Potri.007G010300 ID=Potri.007G010300.1.v4.1 annot-version=v4.1 MDSVSHAAVISSSKLSYGGRVSFNKDKNPLLRSSVVSLRNWRAPSRNLGVLAAQIGNKEIDFSDPDWKTNYQRDFERRFNIPHITDIFPDADPIPSTFCL KMRTPVMEDFAGGYPSDEEWHGYINKNDRVLLKVIHYSSPTSAGAECIDPNCTWVEQWVHRAGPREKIYFKPEEVKAAIVTCGGLCPGLNDVIRQIVITL EIYGVKKIVGIPFGYRGFSDEGLSEMPLSRKVVQNVHLSGGSLLGVSRGGPSVSDIVDSMEERGINMLFVLGGNGTHAGANAIHNECRRRRMRVAVVGVP KTIDNDILMMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRNSGFIAMHASLASGQIDICLIPEVPFHLHGPLGVLRHLKFLIETKGSAVLC VAEGAGQNFLGRTNATDASGNTVLGDFGVHIQQETKKYFKEIGVHADVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGYSGITVGICNTHYVYF PIPEVISYPRAVDPNSRMWHRCLTSTGQPDFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Potri.007G010300 [exp]	0	1
AT3G14840			Leucine-rich repeat transmembr...		Potri.019G009700 [exp]	8.66	0.7930
AT3G62760		ATGSTF13	Glutathione S-transferase fami...		Potri.002G207672 [exp]	11.13	0.7908
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003300 [exp]	16.58	0.8025
AT1G34750			Protein phosphatase 2C family ...		Potri.005G164600 [exp]	20.68	0.7974
AT5G53110			RING/U-box superfamily protein...		Potri.001G091700 [exp]	24.95	0.7722
AT1G07650			Leucine-rich repeat transmembr...		Potri.019G009601 [exp]	27.49	0.7693
					Potri.001G201300 [exp]	36.94	0.7631
					Potri.006G198401 [exp]	37.14	0.7599
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.014G140700 [exp]	45.23	0.7269
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.018G085100 [exp]	51.24	0.7538

Compare expression of checked genes

Potri.007G010300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.