Plant FIBer expression Database

Potri.007G010400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G38090 316 / 6e-110 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025724
[exp]
328 / 2e-114 AT4G38090 311 / 4e-108 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4)
Lus10035937
[exp]
327 / 2e-114 AT4G38090 313 / 2e-109 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0329 S5 PF01205 UPF0029 Uncharacterized protein family UPF0029
Representative CDS sequence
>Potri.007G010400.3 pacid=42764820 polypeptide=Potri.007G010400.3.p locus=Potri.007G010400 ID=Potri.007G010400.3.v4.1 annot-version=v4.1
ATGGCAGCAGGTATAACAAGAGTCTCTAGCTGCTATTATCATCACCTGATTCTGAAGAATAAGAATGGTCTATCTGCCTCTGTAGCTGTCTCCACCAGTT
TCAAGAAGATGGTAACCAACGCCGCCTCCGCCACCATCACGGCTAGTAGCAGCATTAATCATGGTGAGTACAGGAGCATTGCGGAGAGAGTGAGTTTGGA
AAAAGAAATAAAAAAGAGCAAATTCATAGCCATAGCTGCTCCCATCTCTGATGAAGAATCCGCCTTCTCCTTCCTCTCCGAGGTGAGAGATCCACGTGCC
ACTCATAATTGCTGGGCTTTTAAGGTAGGACAGCACAGCCGTTGTAATGATGATGGTGAACCATCTGGGACTGCTGGCAAACCTATTCAATCTGCTATTC
TTTCTTCTCATATCGACAGAGTCATGGTCGTTGTCATCCGCTATTTTGGAGGTATCAAACTAGGAACTGGTGGACTGGTTAGGGCTTATGGTGGGGTTAC
ATCTGAATGCTTGAGAAATGCCCCTACTTGTCTCGTCAAATCTAAGGTCCCTATGGCCGTGGAGGTTCCCTTTGATCTCTTAGGACTCGTGCAACATCAG
CTACAGCATTTTCAAGTTGAGGACATCAAGCAGGATTATGAGACTGGTAAAGATGGTTTTGCCATGATCTCTTTCAAAGTTGATTTTGACCAGGTTGAGA
AATTGGAGAATGCTGTCAAAGCAAATTGTAGCCGACAACTTGTGTTTTATAAACAGTGA
AA sequence
>Potri.007G010400.3 pacid=42764820 polypeptide=Potri.007G010400.3.p locus=Potri.007G010400 ID=Potri.007G010400.3.v4.1 annot-version=v4.1
MAAGITRVSSCYYHHLILKNKNGLSASVAVSTSFKKMVTNAASATITASSSINHGEYRSIAERVSLEKEIKKSKFIAIAAPISDEESAFSFLSEVRDPRA
THNCWAFKVGQHSRCNDDGEPSGTAGKPIQSAILSSHIDRVMVVVIRYFGGIKLGTGGLVRAYGGVTSECLRNAPTCLVKSKVPMAVEVPFDLLGLVQHQ
LQHFQVEDIKQDYETGKDGFAMISFKVDFDQVEKLENAVKANCSRQLVFYKQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G38090 Ribosomal protein S5 domain 2-... Potri.007G010400
[exp]
0 1
AT3G23560 ALF5 ABERRANT LATERAL ROOT FORMATIO... Potri.011G117300
[exp]
2.00 0.8947 Pt-HLS3.1
AT5G22350 ELM1 ELONGATED MITOCHONDRIA 1, Prot... Potri.004G197000
[exp]
2.82 0.8388
AT5G18810 SCL28, At-SCL28 SC35-like splicing factor 28 (... Potri.008G196700
[exp]
7.74 0.8151
AT5G57060 unknown protein Potri.003G044400
[exp]
8.94 0.8347
AT5G62950 RNA polymerase II, Rpb4, core ... Potri.005G067600
[exp]
10.24 0.8419
AT4G16520 ATG8F autophagy 8f, Ubiquitin-like s... Potri.008G136040
[exp]
11.00 0.8313
AT1G64720 CP5 Polyketide cyclase/dehydrase a... Potri.015G005000
[exp]
13.63 0.8141
AT1G18490 Protein of unknown function (D... Potri.015G055600
[exp]
15.87 0.8349
AT4G12130 Glycine cleavage T-protein fam... Potri.001G117700
[exp]
16.37 0.8540
AT5G64610 HAM1 histone acetyltransferase of t... Potri.005G171700
[exp]
16.91 0.8300

Potri.007G010400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.