Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22530 941 / 0 Alkaline-phosphatase-like family protein (.1) AT5G17250 170 / 3e-43 Alkaline-phosphatase-like family protein (.1) AT3G01380 67 / 7e-11 transferases;sulfuric ester hydrolases;catalytics;transferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G059300 [exp] 172 / 9e-44 AT5G17250 1095 / 0.0 Alkaline-phosphatase-like family protein (.1) Potri.001G350700 [exp] 61 / 3e-09 AT3G01380 1392 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025722 [exp] 1018 / 0 AT2G22530 1008 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10035939 [exp] 401 / 6e-126 AT2G22530 410 / 1e-129 Alkaline-phosphatase-like family protein (.1) Lus10005793 [exp] 185 / 8e-48 AT5G17250 1088 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10006806 [exp] 176 / 1e-44 AT5G17250 1085 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10039473 [exp] 66 / 1e-10 AT3G01380 1466 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Lus10039444 [exp] 54 / 9e-07 AT3G01380 1238 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [poplar] [flax] Alk_phosphatase PF01663 [poplar] [flax] Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
Representative CDS sequence Show only first row Show all	>Potri.007G010600.1 pacid=42764944 polypeptide=Potri.007G010600.1.p locus=Potri.007G010600 ID=Potri.007G010600.1.v4.1 annot-version=v4.1 ATGAAATTATCAATCATAATTACAGTAATAATATCCGCAGTTATCCTTCAAATTATCGGTCTCTCACTCTTCATCTTCGGCTTCTTCCCCGTCAAACCAG CTCTCTCCGGCGTCAGTGGTCCTGAGAGCTTTTATTACGACGATGGCGGCGGCAGCGATTCCGTTGCAAATCACACGCGGGCGTCTATGCCTCCTCATCT CCTCAAATCTCTCTATCAGGAGCTCTCCGGAATCCATCCTTCTTTTGAACGTCTGATTTTGATGGTTATTGATGGTCTTCCAGCGGAATTTGTTCTCGGA AAGGATGGGCAGCCTCCACGGGAGGATTTCAGGGAAGCCATGCCGTATACTCAGGCATTGCTTTCTAATGGAATGGCAACTGGATACCATGCGAAGGCTG CACCTCCTACTGTTACCATGCCTCGTTTGAAGGCCATGGTTTCCGGTGCGATAGGGGGCTTCTTGGATGTGGCTTTCAATTTTCATACACAAGCTATGTT AGATGATAATCTTCTTGGTCAATTTTTTAGGATTGGTTGGAAAATGGTGATGCTTGGTGATGAAACCTGGCTCAAGTTGTTTCCGGGATTATTCACAAGA CATGATGGAGTTAGCAGTTTTTATGTTAAAGACACAGTACAGGTAGATCAAAATGTTTCTCGACATTTGGAGAACGAGCTTAACAGAGATGACTGGAATC TTTTGATTCTTCATTATCTGGGTTTGGATCATGTTGGGCATATTGGTGGACGTAACAGTATTTTGATGGCTCCAAAACTTAAGGAGATGGATGAAGTGGT GAAGATGATTCATTTGAGCACTATCCAGACTCGAGATAATGATCAAGGAAAGACACTTCTGGTTGTAGTAAGCGATCATGGCATGACTGAGAATGGTAAT CATGGGGGCTCTTCGTATGAAGAAACCGACTCGTTAGCTCTCTTTGTTGGCCTCAAAAATGATCTCTCTGATTATGCAGCATCCTCTTGTGACTCTATTT ACCAGGTTGACATTGCTCCAACGTTAGCTCTTCTATTTGGTGTGCCGATTCCTAAGAACAATGTTGGTGTCCTGATTTCAGAAGCATTTGATTTATTGAC AGATGATAAACAACTGAGAGTGTTGGAATTGAATTCCTGGCAGCTGCTCCGATTAATCCAAGCACAATTACCCGGTTTATCATGCCGAAACTTGCCAAGC CACGATGGCTTTACAGATGGTCTTGCATCTACAACTGTAGAATGCTCTGGTAGTATGGAGAAGATGTTGTGTTGCCTATATATGAACGCTATAAATCTTC ACAGTTCCTGGAAGTCAAAGTCCCTCTCCAGGTCTAAAAGTAGGGATGATTACAGCTGCACTGTTGCAGCATATCATCAGTTTCTGAAAACTGCAAGTGA GTGGTTATCACGCAGAGTGACTGATAAACCTGTTGGCTTACTTGCTTTTGGGATTGTGGCAATGGCCATATCATCTCTAACATTATTAGGCCTCATGATT TGCATGAGTACAGAGGATCAACCTGGAGAGAACCAACGCCTTTGTAACTCAATTACTGGTTTGCACAAGTGGTCTGTAAATGAAATCTTTCTATTGGGTG TCATGTTAATTCTTGTTATGAGTATGGCTTCGAGTTCTATGGTAGAGGAAGAGCAATATATTTGGCATTTTGTTTTATCAACATCATATGTGCTATTTCT TCGAAAAGCAGTTCAGCCTCTTGCACCAGGAAGTGCAAAGAGCTTTTTCAAATTGATGAAGGGACAGACAGAAAGACTTGATTTTCGCATATCTTCCATC ATTTTGCTTCTTATTTCTGGAAGAATTTTGAGAAGCTGGCACCAAGGTGGTGTAAACTGGACGTATCTTCCAGACATTTCAAAGTGGCTTGAACAGGCTG GGGTTAACCATGTGAGATCAATTCAGCTAGCATCGGGTCTGCTAGTGATCAGTTTAAGCATATTTGCTTTGTTTTTGTTTGGATCTAGGAGAAAAATCAC TCAATTAGTTGGATTTTGCTTTCTCATATGTGGATTCTTGGTTTTATGGCACCTGTATCACAACAATGCATTTGTGTCAGCCAGTTGTGATGCTGCAATA CAGGCACAGATAATATATGCAATTCTTGGTATTGCCACAATTGGCACTTTTGTAGCATTACCATGGTTCATACCTCTTTGGTTCCCTGGTACATGTTCAA AGCCTAATGTGAAATCAACTTTGGTTACTTTTGACGGTCAATGCATATTTTCATTGGTGGAATTCAGAGACTCTTCATATCTGATTGGGTTAGCATATAT AATATGTTGGTGTCTTCTGCAGCTGTTGCTTCAACAGCCAATCAATTCAATGCCCATCCTTTTGCTTCTCATGCAGATCCTCTCTAGCATGCTCTACTTT TCTTGTAGTGGGCTACAGCATATTGAAGTGGAGGTTGCTTTGTTGTACTATATGGGAATGGCAGGCCATTTTGCTCTCGGGAACAGCAATACTCTTGCCA CAATAGATGTTGCTGGAGCTTTTATTGGCCTGTCAAGTCACTCAATGTTTCTTTCTGGCATTTTGATGTTCATCATTACCTACGCGTCCCCAATGTTATT TCTTCTTAGCATGCTGATGTACATCTCCGTGAAGTGCACAAGCTATCTTGCAAATCACCAAAATGTAGATTCGGGGCATCTTGCAAAGATGATTCTTGGA TTTCCTTGTCTGGTTCCAGTGGGCTTGAATTCAATTCTACTGACTTCCTACACCATTGTCTTGCTGTTAATGAGGAACCATTTGTTTGTTTGGAGTGTCT TCTCCCCGAAGTACTTGTATGTTTGTGCTACAACTGTTTGCATCTACGTTGGGGTCTTTGTAGTGGCTGCCACTGAGATTTATACATGTTGGGTGCTGGC ACTGCGGAGAAAGAAGCAGATTTCAATCCGATAG
AA sequence Show only first row Show all	>Potri.007G010600.1 pacid=42764944 polypeptide=Potri.007G010600.1.p locus=Potri.007G010600 ID=Potri.007G010600.1.v4.1 annot-version=v4.1 MKLSIIITVIISAVILQIIGLSLFIFGFFPVKPALSGVSGPESFYYDDGGGSDSVANHTRASMPPHLLKSLYQELSGIHPSFERLILMVIDGLPAEFVLG KDGQPPREDFREAMPYTQALLSNGMATGYHAKAAPPTVTMPRLKAMVSGAIGGFLDVAFNFHTQAMLDDNLLGQFFRIGWKMVMLGDETWLKLFPGLFTR HDGVSSFYVKDTVQVDQNVSRHLENELNRDDWNLLILHYLGLDHVGHIGGRNSILMAPKLKEMDEVVKMIHLSTIQTRDNDQGKTLLVVVSDHGMTENGN HGGSSYEETDSLALFVGLKNDLSDYAASSCDSIYQVDIAPTLALLFGVPIPKNNVGVLISEAFDLLTDDKQLRVLELNSWQLLRLIQAQLPGLSCRNLPS HDGFTDGLASTTVECSGSMEKMLCCLYMNAINLHSSWKSKSLSRSKSRDDYSCTVAAYHQFLKTASEWLSRRVTDKPVGLLAFGIVAMAISSLTLLGLMI CMSTEDQPGENQRLCNSITGLHKWSVNEIFLLGVMLILVMSMASSSMVEEEQYIWHFVLSTSYVLFLRKAVQPLAPGSAKSFFKLMKGQTERLDFRISSI ILLLISGRILRSWHQGGVNWTYLPDISKWLEQAGVNHVRSIQLASGLLVISLSIFALFLFGSRRKITQLVGFCFLICGFLVLWHLYHNNAFVSASCDAAI QAQIIYAILGIATIGTFVALPWFIPLWFPGTCSKPNVKSTLVTFDGQCIFSLVEFRDSSYLIGLAYIICWCLLQLLLQQPINSMPILLLLMQILSSMLYF SCSGLQHIEVEVALLYYMGMAGHFALGNSNTLATIDVAGAFIGLSSHSMFLSGILMFIITYASPMLFLLSMLMYISVKCTSYLANHQNVDSGHLAKMILG FPCLVPVGLNSILLTSYTIVLLLMRNHLFVWSVFSPKYLYVCATTVCIYVGVFVVAATEIYTCWVLALRRKKQISIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22530			Alkaline-phosphatase-like fami...		Potri.007G010600 [exp]	0	1
AT5G17250			Alkaline-phosphatase-like fami...		Potri.003G059300 [exp]	1.41	0.7793
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.019G023900 [exp]	3.46	0.7844
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Potri.015G022400 [exp]	5.74	0.7255
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Potri.011G124700 [exp]	8.12	0.6798
AT3G60460	MYB	DUO1	DUO POLLEN 1, myb-like HTH tra...		Potri.002G140900 [exp]	12.84	0.7481
AT1G06590			unknown protein		Potri.004G081200 [exp]	13.03	0.6785
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.016G095750 [exp]	19.36	0.7109
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.008G216800 [exp]	19.89	0.6680
AT4G16180			unknown protein		Potri.008G104100 [exp]	24.65	0.7593
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G191051 [exp]	24.97	0.7060

Compare expression of checked genes

Potri.007G010600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.