Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10470 1838 / 0 KAC1, KCA1 KINESIN CDKA;1 ASSOCIATED 1, kinesin like protein for actin based chloroplast movement 1 (.1.2) AT5G65460 1802 / 0 KAC2, KCA2 kinesin CDKA ;1 associated 2, kinesin like protein for actin based chloroplast movement 2 (.1) AT2G22610 269 / 2e-74 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G27550 239 / 3e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G72250 245 / 4e-66 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G73860 233 / 1e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 233 / 2e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27000 223 / 2e-59 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT2G47500 220 / 1e-58 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G44730 220 / 2e-58 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110600 [exp] 253 / 3e-69 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.011G140000 [exp] 251 / 4e-68 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.001G436200 [exp] 236 / 2e-63 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.013G020700 [exp] 223 / 2e-60 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G030271 [exp] 221 / 6e-60 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G201000 [exp] 223 / 1e-59 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G104000 [exp] 223 / 2e-59 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 220 / 2e-58 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.001G467600 [exp] 219 / 5e-58 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025721 [exp] 2026 / 0 AT5G10470 1845 / 0.0 KINESIN CDKA;1 ASSOCIATED 1, kinesin like protein for actin based chloroplast movement 1 (.1.2) Lus10035940 [exp] 997 / 0 AT5G10470 872 / 0.0 KINESIN CDKA;1 ASSOCIATED 1, kinesin like protein for actin based chloroplast movement 1 (.1.2) Lus10035941 [exp] 320 / 8e-101 AT5G10470 311 / 2e-98 KINESIN CDKA;1 ASSOCIATED 1, kinesin like protein for actin based chloroplast movement 1 (.1.2) Lus10035954 [exp] 272 / 2e-75 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10025708 [exp] 262 / 5e-72 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10005582 [exp] 231 / 8e-62 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 229 / 3e-61 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10015212 [exp] 223 / 5e-60 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10009851 [exp] 218 / 9e-58 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10029865 [exp] 216 / 3e-57 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.007G010700.1 pacid=42766356 polypeptide=Potri.007G010700.1.p locus=Potri.007G010700 ID=Potri.007G010700.1.v4.1 annot-version=v4.1 ATGGCGGAGCAGAGAAATATGTGGAACTGGGAGGTGGCTGGCTTCGAGCCAAGGCCGGTGGAGGTGGAGCAGCCGATCGTACGGCGGTACTCGATCTCGA CGACGCGAGAGAATTCGGAGTTCTCGAAGCAGGCTCTCGCCTCCAAAGTTCACCGATTGAAAGATAAAATCAAGCTTGCAAAAGAGGATTACTTGGAGTT GAGACAAGAAGCAAGTGATTTACAGGAATATTCTAATGCGAAACTTGATCGAGTTACTCGTTATCTTGGAGTCCTTGCTGAAAAAACTCGTAAGCTAGAT CAAGTTGCCCTTGAAACCGAGGCTAGAATATCTCCACTCATCAATGAGAAGAAAAGATTGTTCAATGACTTGTTAACAGCCAAAGGAAGCATAAAGGTGT TTTGTCGTGTACGACCATTATTTGAAGATGAAAGTCCTTCTGTTGTTGAATTTCCTGATGATTGCACAATCCGCGTCAATACTGGCTCTGATACCATCTC CAATCCCAAAAAAGATTTTGAATTTGACAGAGTTTATGGACCTCATGTGGGACAAGCTGAGTTGTTCACAGATGTTCAACCATTTGTGCAGTCTGCTTTG GATGGATATAATGTTTCTATGTTTGCTTATGGACAAACTCACTCTGGAAAGACACACACTATGGAAGGATCTAGCTATGATCGTGGTTTATATGCTCGTT GTTTTGAAGAGTTGTTTGATTTGGCTAACTCAGATTCAACTTCTACTTCTCAGTTCAATTTCTCTGTTACGGTTTTTGAGCTATACAATGAACAGATAAC TGATTTGCTGTCAGAGTCCGAGAGTACTTTGCAGAAGATCTGCATGGGATCACTGGAATCTTTTATAGAGCTTCAACAAGAAAAAGTCGATAACCCATTG GACTTTTCTAGAATCTTGAAAGCTGCATTTCAGAGACGGGAAAATAACATATCAAAGTTGAATGTTTCTCACTTGATTGTAACAGTGCACATATATTATA ACAATGTGATCAGTGGAGAGAACTTGTATAGCAAGCTTTCTCTTGTTGACCTGGCTGGAAGTGAAGGTCTAATAGCAGAAGATGATAGCAGTGAGCGTGT GACAGACATGCTACATGTGATGAAATCACTCTCAGCGTTGGGGGATGTCTTGTCTTCTTTAACTTCAAGGAAGGATGTTGTTCCTTATGAAAATTCAATG CTGACAAAAGTTCTTGCTGACTCCTTAGGGAGGGATTCAAAAACTTTGATGATACTTAATGTGTGTCCAAATATTGCAAATTTGTCTGAGACATTATCGT CTCTCAGCTTCTGTTCTAGGGCTAGAAATGCTACACTAAGCCTCGGAAATCGAGATACAATTAAGAAGTGGAGAGATGTTGCTAATGATGCACGCAAGGA GTTGTATGAAAAGGAAAAGGAAATTCAAGATCTGAAACAAGAGGTTTTGGAATTGACGCAAGCACTCAAAGATGCAAATGACCAGTGTGTCTTGCTCTTC AATGAAGTTCAGAAGGCGTGGAAAGTTTCTTTCACCCTGCAATCGGATTTAAAGTCAGAGAATATTATGATTGCTGACAAGCATAAGGTGGAAAAGGAAC AAAATGCTCAGCTTAGAAATCAAGTTGCTCAACTGCTACACACGGAACAGGATCAAAAAATGATAATGCAACAAAAAGATTCCACAATTCAGACACTCCA GGCCCAAATTAAAAGCATGGAGTCACAGCTCAATGAAGCTCTCCGTTTGAGGGAAGCTCAGTCAACATTTGGCTCAGAATCAGGGCCTGTGATTTCATCA ATCTCTAAGGCAACCGGGGATGGCATGGATTCTTCAGCAGTAACCAAGAAACTTGAAGAAGAGCTAAGAAAGCGTGATGCTTTGATTGAGAGGTTGCATG AAGAAAATGAGAAACTGTTCGATAGATTAACAGAAAAAGCCTCTTTAGCTGGATCACCCCAGGTGTCTAGTCCATTGTCCAAAGGAACTGTGAATGTTAA GTCTCAGGAGCTGGGAAGAAATGAGAACAATAAAGGACGTTCAATGGATGTTGCTCCATCACCATTGGGTGCAGATAAGACTGATGGAACCGTTGCCTTG GTTAAATCAGGATCTGAGAAAGTTAAATCCACTCCGGCAGGAGAATATCTTACAGCTGCACTAAATGACTTTGATCCTGAACAATATGACAGCCTTGCTG CCATTTCAGATGGTGCAAACAAGCTTTTGATGTTGGTTCTGGCAGCAGTCATTAAAGCAGGTGCTTCTAGAGAGCATGAAATACTTGCTGAAATCAGAGA TGCTGTTTTCTCTTTTATCCGCAAAATGGAACCAAAGAGGGTAATGGATACCATGCTTGTTTCCCGTGTCAGAATTTTGTACATAAGATCTTTGCTTGCC AGGTCTCCGGAGCTGCAGTCCATCAAGGTTCCTCCTGTTGAGTGCTTTTTGGAGAGGGCTAATACTGGACGAAGTAGAAGCTCCAGCCGAGCCAATAGTC CTGGAAGATCCCCTGTGCACTTTGTGGAGGAGCAGATCCAAGGCTTTAAAGTGAACATAAAGCTGGAGAAGAAGTCTAAGCTGTCATCAGTTGTTTTGAG AATGAGAGGAATTGATCAGGATGCATGGAGGCAGCAGGTAACTGGTGGAAAACTGAGGGAAATTCAAGAGGAAGCAAAAAGTTTTGCAATAGGAAACAAA GCTCTTGCTGCTCTCTTTGTTCATACTCCAGCTGGCGAGCTGCAGAGGCAAATTAGGTCCTGGCTTGCGGAGAATTTTGAGTTTCTTTCTGTTACTGGAG ATGATGCATCGGGTGGGATCACTGGTCAATTAGAACTCCTTTCGACTGCAATTATGGATGGCTGGATGGCTGGATTGGGTGCTGCATTGCCTCCCAGTAC AGATGCTCTTGGCCAGCTTCTATCCGAGTATGCAAAACGGGTTTTTACTTCTCAATTGCAACACTTAAAGGATATTGCTGGGACCTTAGCATCAGAAGAG GCAGAAGATGCAGCACAAGTAGCGAAACTGCGTTCAGCTCTAGAGTCTGTTGATCACAAAAGAAGAAAGATTTTGCAACAAATGAGAAGTGATGCAGCCT TATTAACATTGGAAGATGGTGGTTTGCCTGTTCAAAATCCTTCCACTGCTGCTGAAGATGCACGATTAGCATCTCTGATTTCTCTTGATGGCATATTGAA GCAAGTCAAGGATATATTGAGACAATCCTCAGTGAACACCTTGAGTAAATCTAAGAAGAAAACGCTGCTTGTTTCTCTGGATGAACTTGGGGAAAGGATG CCTTCCCTCCTCAATATTGATCACCCATGTGCCCAAAGGCAAATTGCAGAAGCTCGTCGCATGGTTGAGTCAATTCCTGAACAAGATGACCCCCTTCATG AGTTGGCACATGCTCGAAAATCTACTGCTGATTTGGGGTCTGGTACAGAAACTGATGTGGCACAGTGGAACGTTTTGCAATTCAATACAGGCTCTACTAC CCCGTTTATCATCAAGTGTGGAGCAAACTCAAACTCAGAACTGGTGATTAAGGCTGATGGGCGTGTTCAGGAACCTAAAGGTGGTGAAATCATGAGGGTC GTTCCAAGACCATCAGTTTTGGAAAATATGAGCATGGATGAAATGAAACATGTATTCTCTCAACTACCTGAAGCTTTAAGCTTGCTTGCCCTTGCAAGGA CTGCAGATGGTACCCGAGCTAGGTATTCTAGACTTTATAGAACTTTAGCTATGAAAGTTCCCTCATTGAGGGACCTTGTTGGTGAGCTTGAGAAGGGTGG AGTGCTGAAAGATGTGAAGTCTTGA
AA sequence Show only first row Show all	>Potri.007G010700.1 pacid=42766356 polypeptide=Potri.007G010700.1.p locus=Potri.007G010700 ID=Potri.007G010700.1.v4.1 annot-version=v4.1 MAEQRNMWNWEVAGFEPRPVEVEQPIVRRYSISTTRENSEFSKQALASKVHRLKDKIKLAKEDYLELRQEASDLQEYSNAKLDRVTRYLGVLAEKTRKLD QVALETEARISPLINEKKRLFNDLLTAKGSIKVFCRVRPLFEDESPSVVEFPDDCTIRVNTGSDTISNPKKDFEFDRVYGPHVGQAELFTDVQPFVQSAL DGYNVSMFAYGQTHSGKTHTMEGSSYDRGLYARCFEELFDLANSDSTSTSQFNFSVTVFELYNEQITDLLSESESTLQKICMGSLESFIELQQEKVDNPL DFSRILKAAFQRRENNISKLNVSHLIVTVHIYYNNVISGENLYSKLSLVDLAGSEGLIAEDDSSERVTDMLHVMKSLSALGDVLSSLTSRKDVVPYENSM LTKVLADSLGRDSKTLMILNVCPNIANLSETLSSLSFCSRARNATLSLGNRDTIKKWRDVANDARKELYEKEKEIQDLKQEVLELTQALKDANDQCVLLF NEVQKAWKVSFTLQSDLKSENIMIADKHKVEKEQNAQLRNQVAQLLHTEQDQKMIMQQKDSTIQTLQAQIKSMESQLNEALRLREAQSTFGSESGPVISS ISKATGDGMDSSAVTKKLEEELRKRDALIERLHEENEKLFDRLTEKASLAGSPQVSSPLSKGTVNVKSQELGRNENNKGRSMDVAPSPLGADKTDGTVAL VKSGSEKVKSTPAGEYLTAALNDFDPEQYDSLAAISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFSFIRKMEPKRVMDTMLVSRVRILYIRSLLA RSPELQSIKVPPVECFLERANTGRSRSSSRANSPGRSPVHFVEEQIQGFKVNIKLEKKSKLSSVVLRMRGIDQDAWRQQVTGGKLREIQEEAKSFAIGNK ALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGITGQLELLSTAIMDGWMAGLGAALPPSTDALGQLLSEYAKRVFTSQLQHLKDIAGTLASEE AEDAAQVAKLRSALESVDHKRRKILQQMRSDAALLTLEDGGLPVQNPSTAAEDARLASLISLDGILKQVKDILRQSSVNTLSKSKKKTLLVSLDELGERM PSLLNIDHPCAQRQIAEARRMVESIPEQDDPLHELAHARKSTADLGSGTETDVAQWNVLQFNTGSTTPFIIKCGANSNSELVIKADGRVQEPKGGEIMRV VPRPSVLENMSMDEMKHVFSQLPEALSLLALARTADGTRARYSRLYRTLAMKVPSLRDLVGELEKGGVLKDVKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Potri.007G010700 [exp]	0	1
AT1G53250			unknown protein		Potri.001G393700 [exp]	8.94	0.8642
AT1G04640		LIP2	lipoyltransferase 2 (.1.2)		Potri.001G014000 [exp]	19.44	0.8285	LIP2.2
AT1G65320			Cystathionine beta-synthase (C...		Potri.013G087100 [exp]	19.69	0.7994
AT3G48200			unknown protein		Potri.015G079000 [exp]	89.30	0.8212
AT3G03770			Leucine-rich repeat protein ki...		Potri.019G039000 [exp]	95.10	0.7800
AT4G34090			unknown protein		Potri.009G099600 [exp]	144.49	0.8056
AT5G09230		AtSRT2, SRT2	sirtuin 2 (.1.2.3.4.5.6.7)		Potri.005G068400 [exp]	159.54	0.7836
AT1G54740			Protein of unknown function (D...		Potri.013G027100 [exp]	176.60	0.7955
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Potri.006G203500 [exp]	186.67	0.7802
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Potri.005G138400 [exp]	271.85	0.7675	Pt-ZEAEPOX.2

Compare expression of checked genes

Potri.007G010700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.