Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SVP.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22540 330 / 1e-115 MADS AGL22, SVP SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) AT4G24540 231 / 6e-77 MADS AGL24 AGAMOUS-like 24 (.1) AT3G57230 135 / 5e-39 MADS AGL16 AGAMOUS-like 16 (.1.2) AT4G37940 133 / 2e-38 MADS AGL21 AGAMOUS-like 21 (.1) AT2G14210 129 / 5e-37 MADS AGL44, ANR1 ARABIDOPSIS NITRATE REGULATED 1, AGAMOUS-like 44 (.1) AT2G22630 129 / 6e-37 MADS AGL17 AGAMOUS-like 17 (.1) AT5G13790 126 / 2e-35 MADS AGL15 AGAMOUS-like 15 (.1) AT2G45660 124 / 5e-35 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT2G45650 123 / 2e-34 MADS AGL6 AGAMOUS-like 6 (.1) AT1G69120 123 / 2e-34 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G105600 [exp] 301 / 2e-104 AT2G22540 288 / 3e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.005G155300 [exp] 290 / 3e-100 AT2G22540 234 / 8e-78 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.017G044200 [exp] 242 / 4e-81 AT2G22540 206 / 9e-67 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G115200 [exp] 242 / 4e-81 AT2G22540 189 / 3e-60 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.017G044500 [exp] 238 / 7e-80 AT2G22540 201 / 4e-65 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G115100 [exp] 228 / 2e-75 AT2G22540 186 / 1e-58 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G115000 [exp] 211 / 5e-69 AT2G22540 181 / 9e-57 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.009G079000 [exp] 151 / 3e-45 AT4G37940 293 / 3e-101 AGAMOUS-like 21 (.1) Potri.002G109601 [exp] 146 / 1e-43 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035942 [exp] 318 / 2e-109 AT2G22540 307 / 1e-104 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Lus10025719 [exp] 285 / 7e-99 AT2G22540 286 / 4e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Lus10005325 [exp] 154 / 5e-46 AT5G13790 249 / 7e-83 AGAMOUS-like 15 (.1) Lus10039580 [exp] 150 / 1e-44 AT5G13790 246 / 2e-81 AGAMOUS-like 15 (.1) Lus10007100 [exp] 130 / 2e-37 AT3G57230 226 / 4e-75 AGAMOUS-like 16 (.1.2) Lus10034662 [exp] 127 / 9e-36 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10005080 [exp] 126 / 2e-35 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10006715 [exp] 124 / 9e-35 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10034371 [exp] 124 / 1e-34 AT3G02310 364 / 3e-128 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10017871 [exp] 121 / 1e-34 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.007G010800.8 pacid=42765915 polypeptide=Potri.007G010800.8.p locus=Potri.007G010800 ID=Potri.007G010800.8.v4.1 annot-version=v4.1 ATGGCAAGAGAGAGGATTCAGATAAAAAAGATCGATAACGCCACCGCTAGGCAAGTCACGTTTTCAAAACGAAGAAGAGGGCTTTTCAAGAAAGCTGAGG AGCTTTCAGTTCTCTGTGATGCTGATGTTGCTCTCATCATCTTCTCCTCCACTGGCAAGCTCTTTGAGTTCTCCAGCTCAAGCATGAAGGAAATACTGGA AAGGCATAATTTGCACTCGAAGAATCTTGAGAAGCTGGAGCAACCATCTCTTGAGTTGCAGCTGGTAGAAGACAGCACCTGCTCCAGGTTGAGTAAGGAA GTTGCGGAGAAAAGCCATCAGCTGAGGCAAATGAGAGGGGAAGATCTGCGAGGATTGGATATAGACGAATTGCTGCAGCTAGAGAAGTCTCTTGAGGCTG GATTGAGCTGTGTGATAGAGAAGAAGGGTGAGAAGATTATGAACGAGATCACTGATCTTCAAAGAAAGGGAATGCAATTGATGGAAGAGAATGAGAGACT CAAACAGCAAGTGGTGGAGATATCTAATGGCCGAAAGCATGTTACAGCTGATTCAGAGAATGTTGGTTACGAGGAAGGGCAGTCATCAGAGTCCGTAACC AATGTCTGCAACTCAAATGGCCCTCTACATGATTATGAAAGCTCTGATACATCCCTCAAGTTGGGGTTGCCATTTTCAAACTGA
AA sequence Show only first row Show all	>Potri.007G010800.8 pacid=42765915 polypeptide=Potri.007G010800.8.p locus=Potri.007G010800 ID=Potri.007G010800.8.v4.1 annot-version=v4.1 MARERIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFSSSSMKEILERHNLHSKNLEKLEQPSLELQLVEDSTCSRLSKE VAEKSHQLRQMRGEDLRGLDIDELLQLEKSLEAGLSCVIEKKGEKIMNEITDLQRKGMQLMEENERLKQQVVEISNGRKHVTADSENVGYEEGQSSESVT NVCNSNGPLHDYESSDTSLKLGLPFSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.007G010800 [exp]	0	1	SVP.1
AT1G51940			protein kinase family protein ...		Potri.001G190200 [exp]	24.95	0.4872
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G130500 [exp]	67.26	0.4366	Pt-CIPK24.2
AT5G27360		SFP2	Major facilitator superfamily ...		Potri.013G027800 [exp]	72.37	0.4511
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141800 [exp]	89.91	0.4463
AT4G02600		MLO1, ATMLO1	MILDEW RESISTANCE LOCUS O 1, S...		Potri.013G069900 [exp]	149.17	0.4184
AT4G34140			D111/G-patch domain-containing...		Potri.002G197500 [exp]	233.87	0.3810

Compare expression of checked genes

Potri.007G010800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.