Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10480 368 / 4e-131 PEP, PAS2 PEPINO, PASTICCINO 2, Protein-tyrosine phosphatase-like, PTPLA (.1.2.3) AT5G59770 85 / 1e-19 Protein-tyrosine phosphatase-like, PTPLA (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G235400 [exp] 91 / 2e-22 AT5G59770 241 / 3e-80 Protein-tyrosine phosphatase-like, PTPLA (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024408 [exp] 298 / 6e-104 AT5G10480 281 / 2e-97 PEPINO, PASTICCINO 2, Protein-tyrosine phosphatase-like, PTPLA (.1.2.3) Lus10025335 [exp] 292 / 3e-99 AT5G10480 267 / 2e-89 PEPINO, PASTICCINO 2, Protein-tyrosine phosphatase-like, PTPLA (.1.2.3) Lus10040862 [exp] 87 / 1e-20 AT5G59770 235 / 5e-78 Protein-tyrosine phosphatase-like, PTPLA (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04387 [poplar] [flax] PTPLA Protein tyrosine phosphatase-like protein, PTPLA
Representative CDS sequence Show only first row Show all	>Potri.007G010900.1 pacid=42765245 polypeptide=Potri.007G010900.1.p locus=Potri.007G010900 ID=Potri.007G010900.1.v4.1 annot-version=v4.1 ATGGCGAGGATTTTGTCACTCCTCAGGCGCCTGTACCTGACGGTCTATAACTGGGCAGTCTTCCTAGGCTGGTCTCAGGTGTTGTTTCTTGCTGTGAAAA CGTTAAAAGATTCGGGCCATGAACATGTCTACAATGCTGTCGAGAAGCCTCTTCAGCTCGCTCAAACTGCTGCTGTTTTGGAGATTCTTCATGGTCTAGT AGGGTTGGTGAGGTCTCCAATAACAGCAACACTGCCCCAGATTGGTTCAAGACTGTATCTAACATGGATCATCTTATATAGTTTCCCTGAGATTCGGTCC CACTTTCTTGTTACTTCTTTGGTCATTAGCTGGTCAATCACAGAGATTATTCGGTATTCTTTCTTTGGCGTGAAGGAGGTACTTGGTTTTGCACCTTCAT GGCTCATGTGGCTCAGGTACAGCACCTTTTTGCTGTTGTATCCAACTGGTATCAGCAGTGAGGTTGGTCTAGTATATTTCGCCTTGCCATACATTAAGGG ATCTGAAAAATATTGTTTAAGGATGCCCAACAAATGGAACTTTTCTTTTGACAACTTCTACGCTGCAATTCTTGTGCTTGGAATTTACATCCCAGGCAGC CCTCACATGTACAGCTATATGCTTGGGCAGAGAAAGAAAGCTCTCTCTAAATCAAAAAGGGAGTAG
AA sequence Show only first row Show all	>Potri.007G010900.1 pacid=42765245 polypeptide=Potri.007G010900.1.p locus=Potri.007G010900 ID=Potri.007G010900.1.v4.1 annot-version=v4.1 MARILSLLRRLYLTVYNWAVFLGWSQVLFLAVKTLKDSGHEHVYNAVEKPLQLAQTAAVLEILHGLVGLVRSPITATLPQIGSRLYLTWIILYSFPEIRS HFLVTSLVISWSITEIIRYSFFGVKEVLGFAPSWLMWLRYSTFLLLYPTGISSEVGLVYFALPYIKGSEKYCLRMPNKWNFSFDNFYAAILVLGIYIPGS PHMYSYMLGQRKKALSKSKRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Potri.007G010900 [exp]	0	1
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Potri.004G121000 [exp]	2.44	0.9733
AT5G18020			SAUR-like auxin-responsive pro...		Potri.004G164700 [exp]	9.38	0.9743
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.010G052300 [exp]	15.81	0.9067
AT5G02890			HXXXD-type acyl-transferase fa...		Potri.003G082100 [exp]	17.20	0.9732
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Potri.015G089700 [exp]	18.76	0.9721
AT1G07080			Thioredoxin superfamily protei...		Potri.016G122000 [exp]	20.34	0.9729
AT5G04660		CYP77A4	"cytochrome P450, family 77, s...		Potri.008G025500 [exp]	21.67	0.9731
AT2G45600			alpha/beta-Hydrolases superfam...		Potri.014G073000 [exp]	24.12	0.8938
AT5G45910			GDSL-like Lipase/Acylhydrolase...		Potri.004G054400 [exp]	25.23	0.9728
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Potri.012G143600 [exp]	31.63	0.9708

Compare expression of checked genes

Potri.007G010900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.