Plant FIBer expression Database

Potri.007G011100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G10490 713 / 0 MSL2 MSCS-like 2 (.1.2.3)
AT1G58200 600 / 0 MSL3 MSCS-like 3 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G154000
[exp]
731 / 0 AT1G58200 734 / 0.0 MSCS-like 3 (.1.2)
Potri.002G105900
[exp]
729 / 0 AT1G58200 729 / 0.0 MSCS-like 3 (.1.2)
Potri.005G107200
[exp]
59 / 5e-11 AT5G10490 77 / 2e-18 MSCS-like 2 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009277
[exp]
617 / 0 AT1G58200 710 / 0.0 MSCS-like 3 (.1.2)
Lus10012733
[exp]
583 / 0 AT1G58200 630 / 0.0 MSCS-like 3 (.1.2)
Lus10002652
[exp]
68 / 2e-11 AT5G10490 780 / 0.0 MSCS-like 2 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00924 MS_channel Mechanosensitive ion channel
Representative CDS sequence
>Potri.007G011100.1 pacid=42766676 polypeptide=Potri.007G011100.1.p locus=Potri.007G011100 ID=Potri.007G011100.1.v4.1 annot-version=v4.1
ATGGCTATTTCTGGTTCCTTGCAATTTTCCCATGATTTGGGGTTTTGCAAGAACCAGCCCTCAAACAACAATCATAATCAATTTTTTAAGAGTATATTAT
TAGGGAAGGGCAAGGTTCCTTTATTAAGCAACACCTCCCTCAAGTTTCGGCTCCACGATTGTCGTCAACTGTTGCAAAGGCCAATCTATTCTGTATCATT
AAATAGAAGTAATAATAAGAAAACTTTTAGATGCCGTTCTTTTTTGGTGCCACGCCAAGCCCTTGAACTTCCTGCTGTGAAGGCTGCTTCCGTGACGTTG
ACGAGGTCCTTTAATGCTTTACAAACTAGTCCTCTCGTTTTTAAGTTAGCTCCAGCAGTTGGTATTATTGTATTTGCTGTATGGGGTCTGGGGCCGCTAA
TGCGTCAGAGCAGAAACTTGCTATTTCACAAAAGCGACAATAGTTGGAAAAAGAGTGGAACTTATTATGTGATGGCCTCATATATTCAGCCTTTGATGCT
GTGGACTGGTGCGATACTTGTTTGCAGGGCCCTGGATCCTGTTGTTTTGCCCACAGAAGCTAGTGAGGTTGTCAAGCAAAGGCTTTTGAATTTTGTAAGA
TCATTGTCGACAGTGCTCGCATTTGCTTATTGTTTATCAAGCATGATTCAACAAGCTCAAAAGTTCTTCATGGTGTCCCCACAGCCTAGTGATGCAAGAA
CTATGGGTTTCCAATTTGCTGGGAGAGCTGTATACTCTGCAGTGTGGGTAGCTGCTGTTTCACTATTCATGGAGTTGCTGGGTTTCTCTACCCAGAAGTG
GCTCACTGCTGGAGGTCTTGGGACAGTATTGCTGACTCTTGCTGGTCGTGAGATATTCACAAATTTCCTCTCCAGTGCAATGATTCATGCAACTCGGCCT
TTTGTTGTGAATGAGTGGATTCAAACAAAAATTGAAGGCTATGAAGTTTCTGGCACTGTTGAGCATGTGGGTTGGTGGTCACCAACAATTGTCAGAGGTG
AAGATCGTGAAGCAGTTCATATTCCAAATCACAAGTTCACAGTGAACGTTGTTAGAAATCTCAGTCAAAAGACTCATTGGCGTATTAAAACCCACCTGGC
CATTAGTCATTTGGATGCTCATAAGATTAATAATATTGTTGCTGATATGCGCAAAGTCCTGGCCAAGAATCCTCAAGTTGAGCAGCAGAGGTTGCATAGA
AGAATATTTTTGGACAATATCAATCCTGAAAATCAGGCTCTCCTGATCTTAGTGTCCTGTTTTGTGAAGACCTCACATCATGAAGAATACCTTTGTGTGA
AGGAAGCTATACTTATGGATTTACTAAGGGTTATCAGCCATCATAGGGCCCGACTCGCTACGCCAATCCGTACAATACAGAAAATATACAGTGACACCAG
TGACACCGATATAGAAAATGTTCCTTTCACAGATTCCATCTATAACCATGGAGGAGTGGCATCAAAACGTCCTTTACTACTGATTGAACCTTCTTATAGA
ATCAATGGAGAAGATAAAGCAAAATCACAAGCTCGTTCGGGCCGTGTAACTGGAGAGAAAGACAGTAAGACCATATCAAGGCTTACAAGTGACACCAAAG
CAGGAACAAACACGAAGTCTGACTCGAGGGCAAAAGAAACACCAAAATCTGACTCAAAGGGAGATGCAAATAGCGGTGAAACACCAAATTCAGATGCCAA
GGTGCACACAAAGTCTACAACAGTATCCGTATCTCATTCCAGGGTCGATGACAAAATGACAGTGAAATCCCCACCAACTTCTGTCCTTAAGACAAATTCA
AATGCTACAGAAGCATCAGGTTTGGGATCCAAAGCAGCAGGATCAGTCTCTGACAATTTGAATAAAAATAAGACAACATCAGATGCGAAATCTAAGACTA
CTAGTCCTGCAAATGTAAGCCAGAATAGCAAGGTAACTGCAGTTAACTCACAGGAAGCTAGTACTGAAAAAGCAGGTGGATTGAAGGAATCTTCCCAGTC
AAAACAGGAGAAAAGGTCAGTTTCTCAGCCATCATCATCTAGATCTGCATTGGAGGAAAATATAGTTCTTGGTGTTGCTTTGGAGGGTTCAAAGAGAACA
CTTCCTATCGATGAAGACATAGCCTCTCATCCAACTCCACCAGAAGAAAAGGAGATGGCTGCTGCATCACAAAATGGAACCGGATCTCCAACCACTGTGA
AGGATAGGAGAGATGGTCCACCCCCAACTCCAACATCCGGGGATCAGTAA
AA sequence
>Potri.007G011100.1 pacid=42766676 polypeptide=Potri.007G011100.1.p locus=Potri.007G011100 ID=Potri.007G011100.1.v4.1 annot-version=v4.1
MAISGSLQFSHDLGFCKNQPSNNNHNQFFKSILLGKGKVPLLSNTSLKFRLHDCRQLLQRPIYSVSLNRSNNKKTFRCRSFLVPRQALELPAVKAASVTL
TRSFNALQTSPLVFKLAPAVGIIVFAVWGLGPLMRQSRNLLFHKSDNSWKKSGTYYVMASYIQPLMLWTGAILVCRALDPVVLPTEASEVVKQRLLNFVR
SLSTVLAFAYCLSSMIQQAQKFFMVSPQPSDARTMGFQFAGRAVYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRP
FVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDAHKINNIVADMRKVLAKNPQVEQQRLHR
RIFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILMDLLRVISHHRARLATPIRTIQKIYSDTSDTDIENVPFTDSIYNHGGVASKRPLLLIEPSYR
INGEDKAKSQARSGRVTGEKDSKTISRLTSDTKAGTNTKSDSRAKETPKSDSKGDANSGETPNSDAKVHTKSTTVSVSHSRVDDKMTVKSPPTSVLKTNS
NATEASGLGSKAAGSVSDNLNKNKTTSDAKSKTTSPANVSQNSKVTAVNSQEASTEKAGGLKESSQSKQEKRSVSQPSSSRSALEENIVLGVALEGSKRT
LPIDEDIASHPTPPEEKEMAAASQNGTGSPTTVKDRRDGPPPTPTSGDQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G10490 MSL2 MSCS-like 2 (.1.2.3) Potri.007G011100
[exp]
0 1
AT5G04410 NAC NAC2, ANAC078 Arabidopsis NAC domain contain... Potri.010G229900
[exp]
1.00 0.9306 Pt-NAC2.1,NAC049
AT5G51070 SAG15, CLPD, ER... SENESCENCE ASSOCIATED GENE 15,... Potri.012G112000
[exp]
2.82 0.9242 Pt-ERD1.4
AT1G28380 NSL1 necrotic spotted lesions 1, MA... Potri.004G047700
[exp]
3.46 0.9200
AT5G24810 ABC1 family protein (.1.2) Potri.018G003400
[exp]
6.63 0.9067
AT4G25160 U-box domain-containing protei... Potri.004G233000
[exp]
7.07 0.9178
AT3G29400 ATEXO70E1 exocyst subunit exo70 family p... Potri.017G093966
[exp]
7.87 0.8894
AT1G11050 Protein kinase superfamily pro... Potri.017G133000
[exp]
8.83 0.9166
AT2G47820 unknown protein Potri.008G210200
[exp]
9.16 0.9030
AT1G06570 HPPD, HPD, PDS1 4-hydroxyphenylpyruvate dioxyg... Potri.002G057400
[exp]
9.38 0.9115 PDS1.2
AT4G30080 ARF ARF16 auxin response factor 16 (.1) Potri.016G090300
[exp]
9.48 0.8843

Potri.007G011100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.