Plant FIBer expression Database

Potri.007G011200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37870 1058 / 0 PCK1, PEPCK phosphoenolpyruvate carboxykinase 1 (.1)
AT5G65690 1035 / 0 PCK2, PEPCK phosphoenolpyruvate carboxykinase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G107700
[exp]
1073 / 0 AT4G37870 1039 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019242
[exp]
1097 / 0 AT4G37870 1120 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1)
Lus10011582
[exp]
1024 / 0 AT4G37870 1051 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1)
Lus10042933
[exp]
603 / 0 AT4G37870 655 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1)
Lus10028227
[exp]
565 / 0 AT4G37870 614 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1)
Lus10042934
[exp]
377 / 1e-127 AT4G37870 409 / 8e-141 phosphoenolpyruvate carboxykinase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0374 PEP-carboxyk PF01293 PEPCK_ATP Phosphoenolpyruvate carboxykinase
Representative CDS sequence
>Potri.007G011200.3 pacid=42765180 polypeptide=Potri.007G011200.3.p locus=Potri.007G011200 ID=Potri.007G011200.3.v4.1 annot-version=v4.1
ATGGCAGCAAACGGGAACGGAGAGATGGCGATGAATGGGAAAGGAGCTGCAACGGCAAGAAAACCGAAGGGACTCCTGCCAAGTATCACCACAAGTGACA
AGCATCATGATGTCTGCCATGATATGAGCGCACCAACCGTGAAGGCCCAGACAATTGACGAGCTCCACTCTCTTCAAAAGAAGAAATCAGCACCCACTAC
TCCCATTAAAGGGTTTCAGAGTACCTTTGCTGCTCTCTCCGAAGAAGAACGCCAGAAACAGCAGCTCCAGTCCATCAGTGCATCTTTGGCATCGTTGACG
AGAGAAACAGGACCGAAAGTGGTGAGAGGAGACCCTGCTAGCAAGAGCCAGACCAGCCCAAGGGTTCACCAGCAACATGTAGCTGAACCCGCCATCAGCG
CCAGCGACAGCTCCTTGAAGTTCACTCACGTCCTCTACAACCTCTCCCCTGCCGAGCTTTATGAGCAGGCCATACACTATGAGAAAGGGTCCTTCATAAC
ATCAACTGGTGCATTGGCTACCCTTTCCGGTGCCAAAACTGGTCGGGCTCCGAGAGATAAACGTGTTGTCAAGGATGATGTTACCGGAGAAGAGCTTTGG
TGGGGAAAGGGTTCACCCAACATTGAAATGGACGAGCATACCTTCATGGTTAACAGAGAAAGAGCTGTTGATTACTTGAATTCTCTGGACAAGGTCTTTG
TGAACGATCAATTCTTGAACTGGGACCCTGAGAACAGAATCAAAGTCCGGATTGTTTCTGCCAGAGCCTACCATTCACTCTTCATGCACAACATGTGTAT
CCGGCCCACTCCTGAAGAGCTGGAGGATTTCGGTACTCCGGACTTCACTATATACAATGCAGGCCAGTTCCCATGTAATCGTTATACACACTACATGACA
TCCTCTACTAGTATAGATCTGAACCTTGCTAGAAGGGAAATGGTCATCCTCGGCACACAGTACGCCGGGGAAATGAAGAAGGGTCTGTTCAGTGTAATGC
ATTATCTCATGCCTAAGCGTCGAATCCTCTCCTTACATTCTGGCTGCAATATGGGAAAAGATGGAGATGTTGCCCTCTTCTTTGGACTGTCAGGTACCGG
GAAGACAACTCTGTCTACTGATCCAAACAGATATCTAATTGGAGATGACGAGCATTGCTGGACTGAGACCGGAGTGTCAAATATTGAAGGCGGATGCTAT
GCCAAATGCATTGATCTCTCAAGGGAGAAGGAGCCTGAAATCTGGAATGCCATCAAGTTTGGAACTGTGCTGGAAAACGTGGTGTTCGAGGAGCACACTC
GAGAGGTGGATTATGCTGATAAATCCGTTACAGAGAACACTCGAGCATCCTACCCTATCGAGTACATTCCTAATGCGAAGATACCATGTGTTGGTCCGCA
CCCAAAGAATGTTATCCTTTTGGCATGTGATGCATTTGGTGTACTCCCACCAGTGAGCAAGCTGAACTTGGCACAGACCATGTATCATTTCATCAGTGGC
TATACCGCTTTGGTGGCTGGCACAGAAGAGGGTGTGAAGGAGCCAAGGGCAACATTCTCAGCTTGCTTTGGTGCAGCATTTATAATGATGCACCCTACCA
AATATGCAGCTATGCTGGCTGAGAAGATGCAGAAGCATGGTGCAACAGGATGGCTTGTCAACACTGGCTGGTCAGGTGGAAGCTATGGTTCAGGAAGCCG
TATCAAGTTAGCATACACAAGGAAAATCATTGATGCCATACATTCTGGCAGTCTCTTGAAGGCAGAATACAAGAAAACTAAGGTGTTTGGGCTAGAGATC
CCCACCGAGGTTGAGGGAGTGCCCTCTGAAATCCTGGATCCAGTGAACACTTGGTCAAACAAGCTAGGCTACGAGGATACCCTGATGAAGCTGGCAGGTT
TGTTCAAGAATAACTTTGAGACATTCACTGATCACAAGATTGGAAAGGGCAACGAGCTCACAGAAGAGATCCTCGCAGCCGGTCCAAATTTCTAA
AA sequence
>Potri.007G011200.3 pacid=42765180 polypeptide=Potri.007G011200.3.p locus=Potri.007G011200 ID=Potri.007G011200.3.v4.1 annot-version=v4.1
MAANGNGEMAMNGKGAATARKPKGLLPSITTSDKHHDVCHDMSAPTVKAQTIDELHSLQKKKSAPTTPIKGFQSTFAALSEEERQKQQLQSISASLASLT
RETGPKVVRGDPASKSQTSPRVHQQHVAEPAISASDSSLKFTHVLYNLSPAELYEQAIHYEKGSFITSTGALATLSGAKTGRAPRDKRVVKDDVTGEELW
WGKGSPNIEMDEHTFMVNRERAVDYLNSLDKVFVNDQFLNWDPENRIKVRIVSARAYHSLFMHNMCIRPTPEELEDFGTPDFTIYNAGQFPCNRYTHYMT
SSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRRILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTDPNRYLIGDDEHCWTETGVSNIEGGCY
AKCIDLSREKEPEIWNAIKFGTVLENVVFEEHTREVDYADKSVTENTRASYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISG
YTALVAGTEEGVKEPRATFSACFGAAFIMMHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGSRIKLAYTRKIIDAIHSGSLLKAEYKKTKVFGLEI
PTEVEGVPSEILDPVNTWSNKLGYEDTLMKLAGLFKNNFETFTDHKIGKGNELTEEILAAGPNF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G37870 PCK1, PEPCK phosphoenolpyruvate carboxykin... Potri.007G011200
[exp]
0 1
AT3G16500 AUX_IAA IAA26, PAP1 indole-3-acetic acid inducible... Potri.001G190300
[exp]
4.58 0.8199
AT5G18860 NSH3 nucleoside hydrolase 3, inosin... Potri.008G197500
[exp]
6.92 0.7806
AT4G36010 Pathogenesis-related thaumatin... Potri.005G112700
[exp]
10.81 0.7905
AT4G24230 ACBP3 acyl-CoA-binding domain 3 (.1.... Potri.014G018700
[exp]
14.14 0.7954
AT4G23180 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-li... Potri.004G024800
[exp]
15.29 0.7872
AT4G36220 CYP84A1, FAH1, ... ferulic acid 5-hydroxylase 1 (... Potri.007G084400
[exp]
15.62 0.8169
AT5G38280 PR5K PR5-like receptor kinase (.1) Potri.017G009400
[exp]
16.73 0.8007
AT1G66480 PMI2 plastid movement impaired 2 (.... Potri.017G128800
[exp]
22.44 0.7686
Potri.004G202433
[exp]
38.53 0.7935
AT1G62400 HT1 high leaf temperature 1, Prote... Potri.011G022800
[exp]
47.47 0.7649

Potri.007G011200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.