Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65500 575 / 0 U-box domain-containing protein kinase family protein (.1) AT5G57035 250 / 4e-73 U-box domain-containing protein kinase family protein (.1) AT2G45910 250 / 7e-73 U-box domain-containing protein kinase family protein (.1) AT5G61560 235 / 1e-67 U-box domain-containing protein kinase family protein (.1.2) AT5G61550 234 / 6e-67 U-box domain-containing protein kinase family protein (.1.2) AT3G49060 231 / 4e-66 U-box domain-containing protein kinase family protein (.1.2) AT2G19410 231 / 5e-66 U-box domain-containing protein kinase family protein (.1) AT5G51270 223 / 3e-63 U-box domain-containing protein kinase family protein (.1) AT4G25160 219 / 1e-61 U-box domain-containing protein kinase family protein (.1) AT5G26150 164 / 8e-43 protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160200 [exp] 245 / 1e-70 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160300 [exp] 239 / 2e-69 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.014G084900 [exp] 235 / 5e-67 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.009G030400 [exp] 233 / 2e-66 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.006G147000 [exp] 230 / 4e-66 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.001G239100 [exp] 224 / 8e-64 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.012G143100 [exp] 219 / 6e-62 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Potri.004G233000 [exp] 207 / 2e-57 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.006G078500 [exp] 167 / 1e-43 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025715 [exp] 524 / 4e-177 AT5G65500 655 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10035947 [exp] 523 / 7e-177 AT5G65500 625 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10036362 [exp] 263 / 7e-77 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10014772 [exp] 261 / 3e-76 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10016557 [exp] 246 / 2e-71 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10040825 [exp] 244 / 1e-70 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10027490 [exp] 225 / 5e-64 AT3G49060 514 / 2e-171 U-box domain-containing protein kinase family protein (.1.2) Lus10039245 [exp] 226 / 6e-64 AT3G49060 556 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036363 [exp] 213 / 4e-60 AT2G45910 528 / 9e-178 U-box domain-containing protein kinase family protein (.1) Lus10026439 [exp] 171 / 1e-45 AT5G12000 662 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.007G011500.9 pacid=42765393 polypeptide=Potri.007G011500.9.p locus=Potri.007G011500 ID=Potri.007G011500.9.v4.1 annot-version=v4.1 ATGGAGGATGATCAAGGAGTGATGGTTGCAAAAAAGGCCAACTTTAGAAGCTGGTTAGGAAAAATGTTTACCGACAACTCCCATGATTCTCACCAGTTAC CTGCCACGTCAAAGGCCCTAGAGAATGAAAATCAGTGGGAAAATTATGCCCAAGAGATTGAAAATTATTTCGAACATTTGCTGTCTTTGAATTTAGATGA AGAAATCTGCAAGGAAGAGAATGATATTTTGCAGGCTGATTCAACGGAACCAGGTGTGGCAGAAGATGCTGTTTCTACTATGGCTATGAGTGTTGCAGCA AAAATGGCATCTATGAGAAGAAGAATGGAGGGAACCCAGAAAATGATTCAAATGAAGAGGGAAGAGAGTAAAGTCAATTCAGAAAGATGTGCAAAAGCTG AACGGGCTAAATGTTTGTGCAATAGCCGGGTTGAGGAACTTGAAGCGAAGATTCAAGAAGAGGTCTTGAATCGCTTAGATTTAAGTAAAAGCTTAGATGC CGAGAAAGAACAAATTCAAGAAATCAGACGTGATATTCAAGAAAGCAAGAAGAGGCTAAGCTCCCTTGTTGAGCTCCGATCAGAGGTCTATAGCAAACTC CAAACATCAACCATGGCAAGATCACATGTGGAGGTTCAGTTAGAGAAGGCAGTCATTGCAAGAGCACAAATGGTTAGAGAGATCGAGGAGTTACGGAAAC AAAGAGATATTCTTCGGCGTCGAATCGAGTTCTGTAAGGAAAAGGATGCCGTGGGAACGGTGGCAAAGTTGAATGAATTATGTTGTGGTTACAGAGAGTA CACTACAAAGGATATCAGATCAGCAACAGACAACTTTTCTGAGAGTCTAAGATTGAAATCCGGCGGGCATTGGACAAATGTATATCGTGGGCGTATCAAT CACACGACTGTTGCAATCAAAATGCTCAGTTTCGATAATGGGTTGTCTCAAGAAGCTTTTCTAGCTAAGGTGAAGGCACTTAACAGCATTAGACACCCGC ATTTGGTTGCCATTATTGGGTCTTGCTCTGAGCCCAGGTGCATCATTTTTGAATATATGCACAATGGAAGCTTAAGGGACATCTTGTTTTCGTCCTCTCA AAGAAACCATGGAAAAAGAAACCGGGCCTTCAGGTGGAATCATAGGATCCGGGTAGCTCATGAGATATGTTCAGGCCTGAGCTTCCTCCACTTGGCTCGA CCCAGACCCTTTGCTCAAGTTCACTTGACTGCATCGAATGTCCTCCTCGATCGCAATCTAGTTGCTAAGATCGGTGGGTTCAGACTAACTCAGAGTCCAG ATGCAAATGAAACGCTGCCCAATATTCAGGCTTTTGGAGTTTTATTGTTCCAACTTTTGACAGGGAGAAATCGGACCGGGCTGGTCGAGGAGGCGATGGC AATGGACAAGACAGCCCTGCTTACGGTTTTAGATGAGAGGGCCGGAAAGTGGCCATTGGACTTAGCTTATGAACTTGTTGGGATAGCAACGAGGTGTTTG GAGTGCAAAGTAGATTTCAGTCTAGCAAAAACAAGGGAAGAGCTTGAAAAGATTACTAGAAAAGCTGATGATCTAGTTGCCAAAAGTGGATGTGAGGTGG TAGTTAATGGAAGTATTGATGATAGAGAAGACTCAAGCGAAGCACCAAGCATTTTCCTCTGCCCTATATTACAGGAGGTAATGAAAAATCCGCATGTTGC AGCGGATGGATTTTCGTATGAGTTGGAAGCCATCGAGGAATGGCTAAACACACAGCGGGATACTTCACCGATGACAAATTTAAGGCTTAAGCACAAATTC CTTACTCCGAATCACACCCTTCGTTCCCTAATTCAAGAATGGAATAGAAGGAAATCCACTGCTTCCTGA
AA sequence Show only first row Show all	>Potri.007G011500.9 pacid=42765393 polypeptide=Potri.007G011500.9.p locus=Potri.007G011500 ID=Potri.007G011500.9.v4.1 annot-version=v4.1 MEDDQGVMVAKKANFRSWLGKMFTDNSHDSHQLPATSKALENENQWENYAQEIENYFEHLLSLNLDEEICKEENDILQADSTEPGVAEDAVSTMAMSVAA KMASMRRRMEGTQKMIQMKREESKVNSERCAKAERAKCLCNSRVEELEAKIQEEVLNRLDLSKSLDAEKEQIQEIRRDIQESKKRLSSLVELRSEVYSKL QTSTMARSHVEVQLEKAVIARAQMVREIEELRKQRDILRRRIEFCKEKDAVGTVAKLNELCCGYREYTTKDIRSATDNFSESLRLKSGGHWTNVYRGRIN HTTVAIKMLSFDNGLSQEAFLAKVKALNSIRHPHLVAIIGSCSEPRCIIFEYMHNGSLRDILFSSSQRNHGKRNRAFRWNHRIRVAHEICSGLSFLHLAR PRPFAQVHLTASNVLLDRNLVAKIGGFRLTQSPDANETLPNIQAFGVLLFQLLTGRNRTGLVEEAMAMDKTALLTVLDERAGKWPLDLAYELVGIATRCL ECKVDFSLAKTREELEKITRKADDLVAKSGCEVVVNGSIDDREDSSEAPSIFLCPILQEVMKNPHVAADGFSYELEAIEEWLNTQRDTSPMTNLRLKHKF LTPNHTLRSLIQEWNRRKSTAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65500			U-box domain-containing protei...		Potri.007G011500 [exp]	0	1
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.006G038400 [exp]	2.00	0.9395	Pt-GLU1.2
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.014G155100 [exp]	3.16	0.9395
AT3G21250		ATMRP6, ABCC8	ARABIDOPSIS THALIANA MULTIDRUG...		Potri.003G034700 [exp]	3.16	0.9453
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.011G103900 [exp]	4.24	0.9276
AT1G06840			Leucine-rich repeat protein ki...		Potri.013G159500 [exp]	4.58	0.9168
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126201 [exp]	4.69	0.9167
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.018G094200 [exp]	5.09	0.9148	4CL1.4
AT2G40840		DPE2	disproportionating enzyme 2 (....		Potri.006G031700 [exp]	5.83	0.9420
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.005G027200 [exp]	5.83	0.9115
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.001G348000 [exp]	6.63	0.9241

Compare expression of checked genes

Potri.007G011500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.