Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10520 553 / 0 RBK1 ROP binding protein kinases 1 (.1) AT5G65530 551 / 0 Protein kinase superfamily protein (.1) AT5G18910 411 / 1e-139 Protein kinase superfamily protein (.1) AT5G35960 363 / 2e-122 Protein kinase family protein (.1) AT3G05140 352 / 1e-117 RBK2 ROP binding protein kinases 2 (.1) AT2G18890 329 / 3e-109 Protein kinase superfamily protein (.1.2) AT5G57670 317 / 5e-102 Protein kinase superfamily protein (.2) AT1G21590 270 / 1e-82 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G77280 267 / 4e-81 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G18470 248 / 3e-75 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028100 [exp] 396 / 4e-134 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.010G027301 [exp] 391 / 2e-131 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.014G136300 [exp] 384 / 1e-130 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.018G096100 [exp] 342 / 1e-111 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G166600 [exp] 329 / 2e-109 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.018G091200 [exp] 329 / 2e-109 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.006G173700 [exp] 335 / 6e-109 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.002G077900 [exp] 279 / 8e-86 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 273 / 2e-83 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035949 [exp] 615 / 0 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10025713 [exp] 552 / 0 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1) Lus10012727 [exp] 492 / 2e-170 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10034000 [exp] 395 / 3e-131 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10012776 [exp] 390 / 1e-129 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10008192 [exp] 362 / 2e-121 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10018959 [exp] 360 / 8e-120 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10019990 [exp] 335 / 1e-108 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2) Lus10006957 [exp] 323 / 1e-107 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10000968 [exp] 270 / 2e-82 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.007G011700.2 pacid=42766630 polypeptide=Potri.007G011700.2.p locus=Potri.007G011700 ID=Potri.007G011700.2.v4.1 annot-version=v4.1 ATGGCTTTGGAAGAGAGTGAAACCGAAGAAAGCCCAGAAATGGAAACAAATGATGACATGACCAAGAAGACAGAGCCCCCCATCCTTGAAGACCCTTCAC CAAGATGTGTATTGGAGATTCCTATTTCAGGTACGGACTCTGATCACAGCAGCAGCAGCAGCAGCAGCAGTTGCAGCTCAGGTTCAACGGAGAAATTAGT CCCTGAAAGAACGGGGATCTTACGAGAGAGCAATGGTATTCAATGGAAACAAATACTTGATTCATTTAAGAAGAAATCAGTGAGGAGGTTTTCAGTAATT CCATTGATTTCAACGTACGAAACTATTGCCAGGAAGAATTTGAGAAGGAAATTGGCAAGAATCCAACATTCTGCTGATGTCTTTATTGATTGTGAGGGCA TTATGGCGCCTAAACCTTCATGGAGGAATTTTGATTATCTAGAGCTTGAGGCTGCTACTGATAATTTCAGCTCTGAGAATTTGATCGGGGAAGGAGGTCA TGCAAAAGTGTACAAGGGATGCTTATCTGACGGCCAGGTTGTCGCTGTAAAGAAGCTCATGAAAACTGAGAAGCAGGAAGAGGACAGAGTTGGTGATTTC TTATCAGAGCTTGGGATTATTGCACATATAAATCACCCAAATGCAGCTAGATTGCTTGGTTTCAGCATTGATAGTGGTCTGCATCTTGTCCTTGAATTTT TACCACATGGCAGCCTCGCGTCAGTGCTCCACGGTGGATCAGATTGTCTAGAATGGAAGAAAAGGTTTAAGGTGGCTTTAGGAATAGCAGAAGGACTTCA GTATCTCCATCATGATTGCCCAAGGCGCATTATCCATAGAGACATCAAGGCCTCGAACATATTGCTCAACGCAAATTTTGAAGCTCAGATTTCTGATTTT GGATTGGCAAAGTGGCTTCCAGAAAACTGGATTCACCATATTGTCTTCCCTATCGAAGGCACATTCGGATACTTGGCTCCTGAATACTTTATGCATGGGA TTGTTGATGAGAAGACCGATGTATTTGCTTATGGGGTTCTGTTACTTGAGATCATAACAGGTCGCCGTGCTGTTGATTCAAGTAGACAGAGCCTTGTGAT GTGGGCAAAACCATTGTTGGAGGCAAATAATGCTAAAGAACTAGCTGATCCCAGGCTGGGAGATGATTATGATCCCATTGAAATGAAGCATGCCATGTTT ACGGCTTTGATGTGCATTCACCACTTACCCAATACACGTCCACACATGATCAGAGTGGTGCAGCTCTTGAGGGGCGAGGGAGCACCTGTGGAGTTCAAGC AGAAGACGAATGCAGGGAGGGCAGTCCTTCTGGATGGCTGTGACTTGCAAGATTATACTTGTACTACTTACCTCAAAGATCTCAATCGTCATATGCAACT TGTGATGGAGTGA
AA sequence Show only first row Show all	>Potri.007G011700.2 pacid=42766630 polypeptide=Potri.007G011700.2.p locus=Potri.007G011700 ID=Potri.007G011700.2.v4.1 annot-version=v4.1 MALEESETEESPEMETNDDMTKKTEPPILEDPSPRCVLEIPISGTDSDHSSSSSSSSCSSGSTEKLVPERTGILRESNGIQWKQILDSFKKKSVRRFSVI PLISTYETIARKNLRRKLARIQHSADVFIDCEGIMAPKPSWRNFDYLELEAATDNFSSENLIGEGGHAKVYKGCLSDGQVVAVKKLMKTEKQEEDRVGDF LSELGIIAHINHPNAARLLGFSIDSGLHLVLEFLPHGSLASVLHGGSDCLEWKKRFKVALGIAEGLQYLHHDCPRRIIHRDIKASNILLNANFEAQISDF GLAKWLPENWIHHIVFPIEGTFGYLAPEYFMHGIVDEKTDVFAYGVLLLEIITGRRAVDSSRQSLVMWAKPLLEANNAKELADPRLGDDYDPIEMKHAMF TALMCIHHLPNTRPHMIRVVQLLRGEGAPVEFKQKTNAGRAVLLDGCDLQDYTCTTYLKDLNRHMQLVME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10520		RBK1	ROP binding protein kinases 1 ...		Potri.007G011700 [exp]	0	1
AT5G24320			Transducin/WD40 repeat-like su...		Potri.015G009700 [exp]	1.41	0.6611
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Potri.002G108000 [exp]	16.97	0.6194	Pt-IAA8.4
AT3G09730			unknown protein		Potri.006G130600 [exp]	17.94	0.6396
AT3G56370			Leucine-rich repeat protein ki...		Potri.019G058600 [exp]	19.13	0.6606
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.013G017400 [exp]	20.00	0.6410	Pt-RALFL23.3
AT5G01030			Protein of unknown function (D...		Potri.006G093600 [exp]	25.25	0.6152
AT1G48600		AtPMEAMT	phosphoethanolamine N-methyltr...		Potri.012G047301 [exp]	28.58	0.5888
AT3G55030		PGPS2	phosphatidylglycerolphosphate ...		Potri.010G214900 [exp]	34.92	0.5865
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.012G079200 [exp]	35.09	0.6242
AT1G76630			Tetratricopeptide repeat (TPR)...		Potri.002G001700 [exp]	39.59	0.6052

Compare expression of checked genes

Potri.007G011700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.