Plant FIBer expression Database

Potri.007G011800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65540 534 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035950
[exp]
658 / 0 AT5G65540 541 / 0.0 unknown protein
Lus10025712
[exp]
583 / 0 AT5G65540 468 / 1e-159 unknown protein
PFAM info
Representative CDS sequence
>Potri.007G011800.3 pacid=42765842 polypeptide=Potri.007G011800.3.p locus=Potri.007G011800 ID=Potri.007G011800.3.v4.1 annot-version=v4.1
ATGTCAGTCCTGGGCGACGACGGTCTGGGTTATGATCTAGCCCGGAAGCTTGAAACCCTAGGTATGTGGCGCGCTTGGCTCGGCGACTCTCTCTACTCTA
ATTTCCTTCATTCCCTCTCTTCTCCTGCCTCATGGCAGTCCTTCATGCGAACCGACGACTCCAAATCAAAGTCCCATTTCCAGCTTCAGCTCCGAGCTCG
CGCTCTCTTATTCGATAAAGCCAGCGTTTCTCTCTTTCTCAGATCCAACACTGTTGCTGCAGTTTCCAATCTCAATCCAAATTATTTGCAATTGCACGGT
GATGATGTGTACTTCACTCTAGAGGATGAAGATCAACGACGAGAAGGGGGTGGAGTCGGGGCAACCACTAAGAGGTATAAGAACGAAGAATTGCCAGAAA
CATGGTATACTCAGTTTATGGAAAAGCGTAAACTTAAAAGGCCATATAGGCTATCATTCGGGGACAGAGAGTCGGACAAACGCTCACCAGAGCAAATGTC
TACTTATTTTAGACTTGTTGCTAGGCACAAAAGAAGATGTCAGTATTTGGGCTCTGGAAATTCTAATCTAGAAAGCACTTCAAATATGCGTTCTGGTTCT
GTTTTAGATGGGTCTCACTCGGTGGATGATGACTTTGTCTTTTTCCCCGAGACAATGTTTATGTTCAACTGTGTACCCGATAGTGCAATCCCACCAATAA
TTAGAGCTCGAGACATTCAGAAAATAGAGTTCCGTGGAGCTTTTGATTCATTGCCTCAGACCAGAAATCCTGTAATGATAGAGAGGCTTGGTATTAGTGT
GGAACAAGGTGGGAGTTTAAATCGTGGGAAAAATGGGTCTGAAGGTCATAAAAAACTCAGTGAAGAGCAAGCTTTGCAGATGTCTCAAAAGGTAGTAGCC
TGCTTGCTAACAAGAGTTGGTTTTGATGGCGCATCAGAAATTCCCATGGAAGTCTTCTCTCAATTGCTCAGGTGTCATATTTCTAAACTAGGCCGTATCT
TGAGAGTACTTGCTGATAGCTACAGAAAGCAGTGTTCAGCAGTTGAGCTACTTAAGATGTTTCTCCAAACAGCAGGGTTTAGTAATTTGGTCCACTTGAT
GAAGATTGTTAAGGAAGGTGCTAGAAATACTGCAGAACCAACCCACCAACAAGCACACGGAATCCAGTCACAATTTCATTCTCAGCACCAGAATCTTCTT
CGACTACCTCAGCAACTACAGATCCCAAGACAAATGCATCCACAGATGCAGCCAATGGTTCATTCCCAAAATTTAACATTTCAGCAGCAGCAGCAGCATT
TTGAGAGATTGCGTAGGCGCCACACATCCACTCCTCGCCCTGGTATGGACGTGGACAAGGACAAGCCTTTGGTACAAGTAAAGGTTGAAAACCCACCGGA
ATTGCCGTTGGATAATAATGCCGTCAATGCTTTCCATTCCAGACAGCCACAGATGCAGATGCGGCATCAACAAATTGCTGCAATGTCAAATCTCCACGCT
CAGCCTAACAATCAGCTCAGGCAGTTGGCATCCCTCCAAGTTCCCCAAATGCAAACATCGAACATGGGTATGGTGAGGGCTCCACCGGTGAAGGTTGAAG
GTTTTCAGGAATTGATGGGTGGGGATGCGGCATTAAAACATGACACCGAGGAAAATAAGCTAACCTCTCCATCAAGTAAATAA
AA sequence
>Potri.007G011800.3 pacid=42765842 polypeptide=Potri.007G011800.3.p locus=Potri.007G011800 ID=Potri.007G011800.3.v4.1 annot-version=v4.1
MSVLGDDGLGYDLARKLETLGMWRAWLGDSLYSNFLHSLSSPASWQSFMRTDDSKSKSHFQLQLRARALLFDKASVSLFLRSNTVAAVSNLNPNYLQLHG
DDVYFTLEDEDQRREGGGVGATTKRYKNEELPETWYTQFMEKRKLKRPYRLSFGDRESDKRSPEQMSTYFRLVARHKRRCQYLGSGNSNLESTSNMRSGS
VLDGSHSVDDDFVFFPETMFMFNCVPDSAIPPIIRARDIQKIEFRGAFDSLPQTRNPVMIERLGISVEQGGSLNRGKNGSEGHKKLSEEQALQMSQKVVA
CLLTRVGFDGASEIPMEVFSQLLRCHISKLGRILRVLADSYRKQCSAVELLKMFLQTAGFSNLVHLMKIVKEGARNTAEPTHQQAHGIQSQFHSQHQNLL
RLPQQLQIPRQMHPQMQPMVHSQNLTFQQQQQHFERLRRRHTSTPRPGMDVDKDKPLVQVKVENPPELPLDNNAVNAFHSRQPQMQMRHQQIAAMSNLHA
QPNNQLRQLASLQVPQMQTSNMGMVRAPPVKVEGFQELMGGDAALKHDTEENKLTSPSSK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G65540 unknown protein Potri.007G011800
[exp]
0 1
AT3G14180 Trihelix ASIL2 Arabidopsis 6B-interacting pr... Potri.001G026000
[exp]
5.29 0.8276
AT4G33495 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, U... Potri.015G141700
[exp]
6.16 0.8335
AT5G55310 TOP1alpha, TOP1... DNA topoisomerase 1 beta (.1) Potri.011G092700
[exp]
8.06 0.8103 Pt-TOP1.2
AT2G40030 NRPE1, DMS5, AT... DEFECTIVE IN MERISTEM SILENCIN... Potri.003G196900
[exp]
8.24 0.8111
AT1G28060 Pre-mRNA-splicing factor 3 (.1... Potri.010G213300
[exp]
10.24 0.8056
AT1G44910 ATPRP40A pre-mRNA-processing protein 40... Potri.014G013100
[exp]
17.83 0.8095
AT2G36720 Acyl-CoA N-acyltransferase wit... Potri.006G120200
[exp]
18.49 0.8264
AT3G49601 unknown protein Potri.006G233000
[exp]
20.00 0.7986
AT1G31930 XLG3 extra-large GTP-binding protei... Potri.012G042500
[exp]
23.49 0.7664
AT5G64360 EIP9 EMF1-Interacting Protein 1, Ch... Potri.017G044600
[exp]
24.00 0.7754

Potri.007G011800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.