Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22600 295 / 2e-87 RNA-binding KH domain-containing protein (.1) AT1G51580 164 / 5e-42 RNA-binding KH domain-containing protein (.1) AT5G15270 142 / 3e-35 RNA-binding KH domain-containing protein (.1.2) AT5G64390 142 / 2e-34 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT5G09560 109 / 2e-24 RNA-binding KH domain-containing protein (.1) AT5G46190 92 / 9e-19 RNA-binding KH domain-containing protein (.1) AT5G53060 89 / 8e-18 RNA-binding KH domain-containing protein (.1.2) AT1G14170 76 / 4e-14 RNA-binding KH domain-containing protein (.1.2.3) AT4G26000 72 / 1e-12 PEP PEPPER, RNA-binding KH domain-containing protein (.1) AT4G18375 72 / 1e-12 RNA-binding KH domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G012000 [exp] 738 / 0 AT2G22600 325 / 3e-104 RNA-binding KH domain-containing protein (.1) Potri.017G042500 [exp] 200 / 3e-53 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.007G116300 [exp] 181 / 8e-47 AT5G64390 225 / 2e-62 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.010G251700 [exp] 149 / 3e-37 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.002G112200 [exp] 149 / 9e-37 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 120 / 3e-28 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 119 / 1e-27 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 111 / 8e-25 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.015G011100 [exp] 96 / 4e-20 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012725 [exp] 204 / 2e-55 AT2G22600 216 / 1e-61 RNA-binding KH domain-containing protein (.1) Lus10035640 [exp] 195 / 1e-51 AT5G64390 337 / 8e-104 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10010754 [exp] 187 / 5e-49 AT5G64390 311 / 5e-94 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10002662 [exp] 149 / 1e-37 AT2G22600 137 / 3e-34 RNA-binding KH domain-containing protein (.1) Lus10030689 [exp] 123 / 5e-29 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 124 / 7e-29 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10007236 [exp] 112 / 9e-25 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10028237 [exp] 109 / 4e-24 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10036767 [exp] 100 / 2e-21 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10034831 [exp] 100 / 5e-21 AT1G51580 409 / 2e-134 RNA-binding KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.007G011900.4 pacid=42765477 polypeptide=Potri.007G011900.4.p locus=Potri.007G011900 ID=Potri.007G011900.4.v4.1 annot-version=v4.1 ATGCAGCAGCAGCAGCAGAAGCATTACCGTCACAAGGGTCCTCCACGACAGCCGTTGATCGAGCTCCAACCGGGTCAGGTTGCATTCCGAGTAGTCTGTC ATGTTTCGAAAATCGGTGGTCTCATCAGCCACTCCAGCTCCGTAATATCCCCAATCTGGCTTGAAGCCGGTTGCCTTGTTCACTGCGAGGAGGCGGTGAA GGGATCGGAGCACCGGGTGATAGTGGTGGTGGGGTCCGCGTCCCCAGAGAAGAAAATCGCGGTGGGTGAAGGTGAGACGGTGGAAGTGTCTGGAGCGCAG GAGGCGGTGGTTAGGGTTTTAGAGAGGATGTGGAGGGTGGATGGGAAGAAGGATGGTGGTGAGTACGAGGGTTATTGTGGACTTTTGGCCAATACGTCGC AGATTGGTGCCGTTGTGGGTAGAGAAGGCAGGAATATCAAGAGAATGAAGAGAACTAGTGGGGCCCATATCTGGATTCTCCCGGCTCCACTATGCGGTTT GAAGGAAGATCAATTAATTCAGATTACAGGCAGTAGCACTGTGGCTGTAAAGAAAGCAGTGATTGCTGTAACTAGCTGCCTTCAAGATTATCCTCCTCCA TGCGAGAAGGATGAAGTGGGTTTAGGACTTGGAGCTGTTAGGAGAAGGAGAAGTGGTTCCTCTGGTGATCCAAATGCTGAATTCTCTCCTCATTCGTGTT CCCTGCTACCCACATATTCTGAAAATATTGAAACTGATGGAGACCATAAGAAACCTAATGAACAATCACAAGTTCAATTTAGGATGATCTGCTCCCATGG TGCAGCTGGGATCATCATAGGCAAGGGAGGGTCTGTAGTCAGAGCTCTGCAAAATCAAACTGGTGCTTCTATCATCTTTGCTCCTCCTATAACCAACTCC GATGACCGTCTAGTTACTGTTTCTGCATTGGAGAACCTTGAATCATCCCACTCTCCCGCACAGAATGCACTTCTTCTTGTCTTTGATAGATCTATTGAGC ATGACATTGAAAGAGCTCGTTCCTTGGGCTTGATTGAGGAAATTACCGTGACAGCGACCCTCCTGCTGCCATCAAATAGGGTCTCTTGTTTGATTGGAAG AGGAGGTAGGGTAGACTCAGAAATGATAGAAACAACTGGTGCTGATATACAGATAATGCAAGCGGACCAATTCTTTGATTTCGCTTCAAAGAATGATGCA GTAGTGCAGATTACAGGTGAGGAGAAAAATGTACAGAATGCTCTGTTTCAAGTTACCTGTAAACTGAGGGGGAATCTTTTGCCTACCGAGATGCTCAATG GATTGAGGGCAGGGAGCCCCTATAGAAGAGCGGGGGAGATCACTATGTTGCATCAATCAGCTGGCGAATCTCTCGATTCCAATCAGGAAACAAGCTTTGG AAAAAGAGTGGATCAAGTACGTGATACTCCTTCCTCATTCCTGCAGTTGCCACAGATTACAGGGAGTAGCTCTGTGGCCATAAAGAAAGCAGTGATTGAT GTAACTAGCTGCCTTCAAGATTGTCCTCCATACGAGAAGGATGAGGTGGATTTAAGCCTTGGAGCTGGTAGGAGAAGAAGAAGTGGTTCCTCTGGTGAAC CAATGTGTTCCCTGCTACCCACATATTCTGAAAATATTGCAACTGATGGAGACCATAAGAAACCTAATGAACAATCACAAGTTCAATTTAGGATGATCTG CTCCCATGGTGCAGCTGGGAGCATCATAGGCACGGGAGGATCCATAGTCAGAGCTCTGCAAAATCAAACTGGTGCTTCTATCAGCTTTGCTCCTCCTATA ACCAACTCCGATGACCGTCTAGTTACTGTTTCTGCATTGGAGAACCTTGAATCATCGCACTCTCCTGCACAGAATGCACTTCTTCTTGTCTTTGCTAGAT CTATTGAGCATGACATTGAAAGAGCTCGTTCCTTGGGCTTGATTGAGGAAATTACCGTGACAGCAACCCTCCTGCTGCCATCAAATAAGGTCTCTTGTTT GATTGGAAGAGGAGGTAGGGTAGATTCAGAAATGATAGAAACAACTGGTGCTGACATACAGATATTGCAAGGGGACCAAATCTTTGATTTCGCTTCAAAG AATGATGTAGTAGTGCAGATTACAGGTGAGGAGAAAAATGTACAGAATGCTCTGTTTCAAGTTACCTGTAAACTGAGGGGGAATCTTTTGCCTACCGAGA TGCTCAATGGATTGAGGGCAGGGAGCCCCTATAGAAGAGCGGGGGAGATCACTATGTTGCATCAATCAGCTGGCGAATCTCTCGATTCCAATCAGGAAAC AAGCTTTGAAAAAAGATTGGATCAAGTACGCGATACTCCTTCCTCATTGCTGCAGTTGCCACAGATTACAGGGAGTAGCTCTGTGGCCATAAAGAAAGCA GTGATTGATGTAACTAGCTGCCTTCAAGATTGTCCTCCATACGAGAAGGATGAGGTGGATTTAAGCCTTGGAGCTGGTAGGAGAAGAAGAAGTGGTTCCT CTGGTGAACCAATGTGTTCCCTGCTACCCACATATTCTGAAAATATTGCAACTGATGGAGACCATAAGAAACCTAATGAACAATCACAAGTTCAATTTAG GATGATCTGCTCCCATGGTGCAGCTGGAAGAATCATAGGCACAGGAGGGTCTGTAGTCAGAGCTCTGCAAAATCAAACTGGTGCTTCTATCATCTTTGCT CGTCCTATAACCAACTCTGATGACCGTCTAGTTACTGTTTCTGCATTGGAGAACCTTGAATCATCGCACTCTCCTGCACAGAATGCACTTCTTCTTGTCT TTGCTAGATCTATTGAGCATGACATTGAAAGAGCTCGTTCCTTGGGCTTGATTGAGGAAATTACCGTGACAGCAACCCTTCTGCTGCCATCAAATAAGGT CTATTGTTTGATTGGAAGAGGAGGTAGGGTAGATTCAGAAATGATAGAAACAACTGGTGCTGATATACAGATAATGCAAGGGGATCAATTCTTTGATTTG GCTTCTAAGAATGATGCAGTAGTGCAGATTACTGGTGAGCACAAAAATGTACAGAATGCTCTGTTTCAAGTTACCTGTAAACTGAGGGAGAATCTTTTGC CCACCAAGATGCTCAATGGATTGAGGGCGGGGAGCCCCTATAGAAGAGCGGGGGAGAGCACTATGTTGCATCAATCAGCTGGATCAGTCAGCCGGCGAAT GTCTCGATTCCAATCAGGAAACAGGTTTGGAAGAAAGAGTGGATCAAGTACGTGA
AA sequence Show only first row Show all	>Potri.007G011900.4 pacid=42765477 polypeptide=Potri.007G011900.4.p locus=Potri.007G011900 ID=Potri.007G011900.4.v4.1 annot-version=v4.1 MQQQQQKHYRHKGPPRQPLIELQPGQVAFRVVCHVSKIGGLISHSSSVISPIWLEAGCLVHCEEAVKGSEHRVIVVVGSASPEKKIAVGEGETVEVSGAQ EAVVRVLERMWRVDGKKDGGEYEGYCGLLANTSQIGAVVGREGRNIKRMKRTSGAHIWILPAPLCGLKEDQLIQITGSSTVAVKKAVIAVTSCLQDYPPP CEKDEVGLGLGAVRRRRSGSSGDPNAEFSPHSCSLLPTYSENIETDGDHKKPNEQSQVQFRMICSHGAAGIIIGKGGSVVRALQNQTGASIIFAPPITNS DDRLVTVSALENLESSHSPAQNALLLVFDRSIEHDIERARSLGLIEEITVTATLLLPSNRVSCLIGRGGRVDSEMIETTGADIQIMQADQFFDFASKNDA VVQITGEEKNVQNALFQVTCKLRGNLLPTEMLNGLRAGSPYRRAGEITMLHQSAGESLDSNQETSFGKRVDQVRDTPSSFLQLPQITGSSSVAIKKAVID VTSCLQDCPPYEKDEVDLSLGAGRRRRSGSSGEPMCSLLPTYSENIATDGDHKKPNEQSQVQFRMICSHGAAGSIIGTGGSIVRALQNQTGASISFAPPI TNSDDRLVTVSALENLESSHSPAQNALLLVFARSIEHDIERARSLGLIEEITVTATLLLPSNKVSCLIGRGGRVDSEMIETTGADIQILQGDQIFDFASK NDVVVQITGEEKNVQNALFQVTCKLRGNLLPTEMLNGLRAGSPYRRAGEITMLHQSAGESLDSNQETSFEKRLDQVRDTPSSLLQLPQITGSSSVAIKKA VIDVTSCLQDCPPYEKDEVDLSLGAGRRRRSGSSGEPMCSLLPTYSENIATDGDHKKPNEQSQVQFRMICSHGAAGRIIGTGGSVVRALQNQTGASIIFA RPITNSDDRLVTVSALENLESSHSPAQNALLLVFARSIEHDIERARSLGLIEEITVTATLLLPSNKVYCLIGRGGRVDSEMIETTGADIQIMQGDQFFDL ASKNDAVVQITGEHKNVQNALFQVTCKLRENLLPTKMLNGLRAGSPYRRAGESTMLHQSAGSVSRRMSRFQSGNRFGRKSGSST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22600			RNA-binding KH domain-containi...		Potri.007G011900 [exp]	0	1
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Potri.006G132300 [exp]	6.08	0.7438
AT5G58000			Reticulon family protein (.1)		Potri.006G185700 [exp]	13.63	0.6601
AT4G00060		MEE44	maternal effect embryo arrest ...		Potri.014G066000 [exp]	15.55	0.6970
AT2G02970			GDA1/CD39 nucleoside phosphata...		Potri.009G157500 [exp]	17.88	0.6651
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.010G174900 [exp]	25.39	0.6604
AT1G02080			transcription regulators (.1.2...		Potri.014G058800 [exp]	27.44	0.6724
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G020300 [exp]	30.74	0.6403
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Potri.005G215400 [exp]	33.67	0.6499
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G035600 [exp]	34.69	0.6580	XRN4.2
AT5G11700			unknown protein		Potri.018G058300 [exp]	35.66	0.6500

Compare expression of checked genes

Potri.007G011900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.