Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17950 127 / 8e-35 HD WUS1, PGA6, WUS WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) AT3G18010 106 / 1e-26 HD WOX1 WUSCHEL related homeobox 1 (.1) AT5G59340 99 / 2e-24 HD WOX2 WUSCHEL related homeobox 2 (.1) AT2G28610 97 / 6e-24 HD PRS1, PRS, WOX3 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) AT1G46480 96 / 2e-23 HD WOX4 WUSCHEL related homeobox 4 (.1) AT5G05770 88 / 6e-22 HD WOX5A, WOX7 WUSCHEL related homeobox 5A, WUSCHEL related homeobox 7 (.1) AT3G11260 89 / 1e-21 HD WOX5B, WOX5 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) AT2G01500 86 / 1e-19 HD WOX6, PFS2, HOS9 WUSCHEL RELATED HOMEOBOX 6, PRETTY FEW SEEDS 2, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 9, Homeodomain-like superfamily protein (.1) AT5G45980 71 / 5e-14 HD WOX9B, STPL, WOX8 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) AT2G33880 69 / 2e-13 HD WOX9A, STIP, WOX9, HB-3 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114700 [exp] 295 / 4e-101 AT2G17950 129 / 1e-35 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Potri.012G047700 [exp] 100 / 4e-24 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1) Potri.002G124100 [exp] 96 / 6e-24 AT1G46480 221 / 1e-72 WUSCHEL related homeobox 4 (.1) Potri.014G025300 [exp] 96 / 6e-24 AT1G46480 226 / 5e-75 WUSCHEL related homeobox 4 (.1) Potri.015G039100 [exp] 99 / 1e-23 AT3G18010 195 / 3e-59 WUSCHEL related homeobox 1 (.1) Potri.009G029200 [exp] 95 / 3e-23 AT5G59340 171 / 2e-52 WUSCHEL related homeobox 2 (.1) Potri.010G111400 [exp] 96 / 4e-23 AT3G18010 109 / 2e-27 WUSCHEL related homeobox 1 (.1) Potri.008G065400 [exp] 92 / 1e-22 AT3G11260 176 / 9e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.010G192100 [exp] 92 / 1e-22 AT3G11260 159 / 1e-49 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041909 [exp] 155 / 5e-45 AT2G17950 145 / 4e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Lus10028457 [exp] 153 / 3e-44 AT2G17950 146 / 3e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Lus10042007 [exp] 100 / 5e-24 AT3G18010 174 / 2e-50 WUSCHEL related homeobox 1 (.1) Lus10018011 [exp] 100 / 5e-24 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1) Lus10024808 [exp] 95 / 7e-23 AT1G46480 195 / 7e-62 WUSCHEL related homeobox 4 (.1) Lus10038480 [exp] 92 / 1e-22 AT2G28610 130 / 1e-37 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) Lus10040219 [exp] 90 / 2e-21 AT3G11260 179 / 4e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10028271 [exp] 90 / 3e-21 AT3G11260 177 / 4e-56 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10016569 [exp] 86 / 2e-19 AT5G59340 121 / 6e-33 WUSCHEL related homeobox 2 (.1) Lus10040840 [exp] 84 / 8e-19 AT5G59340 110 / 7e-29 WUSCHEL related homeobox 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Potri.007G012100.1 pacid=42766822 polypeptide=Potri.007G012100.1.p locus=Potri.007G012100 ID=Potri.007G012100.1.v4.1 annot-version=v4.1 ATGGAACCTCACCAACAACAACCAAATGAGGATAATAACGGTGGCGCCAAAGGGAACTTTCTTTGCAGGCAAACCAGTACAAGGTGGAATCCCACTACTG ACCAGATAAGAATATTGAAGGAACTGTACTACATCAAAGGTGTTAGGTCCCCAAATGGAGCTGAGATTCAGCAGATCTCTGCTAGGCTTAGAAAGTACGG CAAGATTGAAGGCAAGAATGTATTTTATTGGTTTCAGAACCATAAAGCTCGTGAGAGGCAAAAGAAAAGACTCACCAATGAAGTCCCCATGCAACAAAGA ACTGCCTGGAAACCTGAAGATTATTACTCTTACAAGTACTCCAACAGTAATAATAATCCTGGGTTTTCTTCGGCTTCTTCATCTGCAAATACCGGTGTGG TTACTGTTGGGCAGACAGATAGCCATGGATATGGATCGGTAACCATGCAGGAGAAGAATTCTTGGGACTGTTCAGCACCAGCTGGTGGTAGCAATGGTGC TGGTAGTGGATCCATGAGCAATATTAACTATGGATCAGGGGTTGACATTAACTCTCACAGTTCATCCTATGCTGTATTTGGTCAAGAACAAGAAGCAGCT GCAAAGATTGAGACTCTTCCTCTATTTCCAATGCTTGGTGAGGACATCAGTAGCTCTTTCAACATCAACAATATCAACCCAGACTTTTATTACAGTAGCG GCTGTGGCTATGGTGATTATGGCAATGACACTTCTTCCCGTACTTCCCTGGACCTTAGTCTCTACTCCTACAATGGCCAACCACAAGATTATTAA
AA sequence Show only first row Show all	>Potri.007G012100.1 pacid=42766822 polypeptide=Potri.007G012100.1.p locus=Potri.007G012100 ID=Potri.007G012100.1.v4.1 annot-version=v4.1 MEPHQQQPNEDNNGGAKGNFLCRQTSTRWNPTTDQIRILKELYYIKGVRSPNGAEIQQISARLRKYGKIEGKNVFYWFQNHKARERQKKRLTNEVPMQQR TAWKPEDYYSYKYSNSNNNPGFSSASSSANTGVVTVGQTDSHGYGSVTMQEKNSWDCSAPAGGSNGAGSGSMSNINYGSGVDINSHSSSYAVFGQEQEAA AKIETLPLFPMLGEDISSSFNINNINPDFYYSSGCGYGDYGNDTSSRTSLDLSLYSYNGQPQDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Potri.007G012100 [exp]	0	1
AT4G32150		ATVAMP711, VAMP...	vesicle-associated membrane pr...		Potri.018G125900 [exp]	2.64	0.9165
AT1G04645			Plant self-incompatibility pro...		Potri.018G148630 [exp]	3.74	0.9165
					Potri.007G076750 [exp]	7.21	0.6204
AT1G68510	AS2	LBD42	LOB domain-containing protein ...		Potri.008G120600 [exp]	7.74	0.9053
AT4G20820			FAD-binding Berberine family p...		Potri.001G461700 [exp]	12.48	0.8096
AT5G42567			Protein of unknown function (D...		Potri.018G045250 [exp]	13.03	0.7927
AT4G38040			Exostosin family protein (.1)		Potri.012G091600 [exp]	13.26	0.8131
AT1G15120			Ubiquinol-cytochrome C reducta...		Potri.002G069301 [exp]	13.52	0.6013
AT2G46570		LAC6	laccase 6 (.1)		Potri.014G100600 [exp]	15.16	0.8214
ATCG00670		PCLPP, ATCG0067...	CASEINOLYTIC PROTEASE P 1, pla...		Potri.002G178801 [exp]	16.00	0.6960

Compare expression of checked genes

Potri.007G012100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.