Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17970 458 / 9e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT4G36090 454 / 6e-156 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3) AT1G48980 340 / 3e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein AT2G48080 121 / 1e-29 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT4G02940 114 / 5e-27 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT1G14710 108 / 5e-25 hydroxyproline-rich glycoprotein family protein (.1.2) AT4G02485 42 / 0.0007 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114800 [exp] 789 / 0 AT2G17970 504 / 1e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.010G102100 [exp] 131 / 2e-32 AT1G14710 421 / 3e-139 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.008G138900 [exp] 129 / 1e-31 AT1G14710 423 / 6e-140 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.014G137700 [exp] 96 / 6e-21 AT4G02940 542 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028462 [exp] 515 / 5e-180 AT2G17970 542 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10041917 [exp] 512 / 6e-179 AT2G17970 549 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10028670 [exp] 235 / 2e-74 AT2G17970 249 / 5e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10027990 [exp] 117 / 1e-27 AT4G02940 535 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10008166 [exp] 114 / 8e-27 AT4G02940 511 / 2e-177 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10029637 [exp] 107 / 2e-24 AT4G02940 503 / 4e-174 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10042669 [exp] 102 / 6e-23 AT4G02940 498 / 5e-172 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10028671 [exp] 54 / 3e-07 AT4G36090 75 / 5e-14 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF13532 [poplar] [flax] 2OG-FeII_Oxy_2 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Potri.007G012200.1 pacid=42765151 polypeptide=Potri.007G012200.1.p locus=Potri.007G012200 ID=Potri.007G012200.1.v4.1 annot-version=v4.1 ATGACCGAACTCAATAATCCCGATAACGATGACCCCTTCCTTGTTCAATATCAACCGTCTGAACTTAAAATCGCTTCGGAATTTCTTTCCACCTGGCTCC CTTTCCTCTCTCGGGATCTCTGCCGTGACTGCACCAAAACTCTCTCCGATCGCATTCGCTCTCTATCAGTTATTGTAGAGCTCAAAGGCGAAGATAAGAG TGGGGATTCTCCGAAATTGAATGATAAAGTGGAATTGTCCAACGGGAATTGTTGTTCTGATGGTAATTGTGAAAATAATTCCGTGGGAAGTTTGAAAGAG GAAGATGACACGAATTCGATAGTTAGTTGGAAAGATGGAACACCTGGGTGGTCTGAAACACCACCCATGTCGGAGGCTTCCACTAGTGGATTTCATAGTG AGAGGCACTTGGGGATGTCTTGGGCGGATATGGCACAGGATGATGAACTTGCAAAAGAAGAGAAGGAACTAGAACAGCAGGAGTTGAATAAACGGGAAGT TAATGTGAATGATTCAGCGGGTGATTTGAGGATAACAAAGGTTGTTGGGAAGCCTACTACGTTAGCGTATGAGCAAAGCGAATACAATCGGTTTATGAAT GTGAAGAGGAAGAAGGAGTTTATGTGTTATGAGAAGGTTAATGGGAAGCTTACTAATATTCTCCAGGGTCTCGAACTTCACATGGACATTTTCAGTACCG CGGAGCAGAAGAGGATTGTTGATCATGTGTATGCTCTTAAAGAGAAAGGGAAAAAGGGAGAATTGAAAGAACAAACGTATTCAGCTCCACAAAAGTGGAT GAGGGGCAAAGGGCGTGTGACTCTCCAGTTTGGTTGTTGTTACAATCACGTAACAGATAAAAATGGAAATCCGCCAGGCATTGTCCAGGATGAAATGGTA GATCCTATACCTGTCCTTTTTAAAGTGATAATCAGAAGGCTGGTCAGATGGCATGTTATCCCGCCGACTTGTGTGCCGGACAGTTGTATTGTTAACATTT ATGAAGAAGGGGACTGTATACCTCCTCACATTGATAACCATGATTTTGTTCGACCTTTCTGTACTGTCTCTTTTCTTAGCGAGTGCAATATGCTATTTGG ATCACACTTAAAGATTGTGGGTGTGGGTGACTTTGATGGTCCAATCGCAATCCCTCTTCCTGTGGGATCTGCTCTTGTCTTAAATGGAAATGCAGCAGAC GTTGCTAAGCATTGTGTGCCTTCAGTTCATAAAAGGAGGATATCAATCACATTTAGAAAAATGGATGAAGCAAAACGACCTATAGGTTTTATTCCAGATC CTGGTTTGCAGGGAATTCAGCCGTTGCCACACGAACTGGATAAAACAAGGAGGTTAAATTCTCCTAAATCCGAGCCTTACATGAAAAGGCGGCCATTTGA TAAAGAGGGTAAGATGGAAGGAAGGAGATTTGCAGAGAATGGTTCCCAATCAGAACCTGATTACACAAGTCAGAGTCGACGACCGGCTGCATATCAGCGG AGGATCAAGGAAAATATAGGTAGAGCTGATGGATGA
AA sequence Show only first row Show all	>Potri.007G012200.1 pacid=42765151 polypeptide=Potri.007G012200.1.p locus=Potri.007G012200 ID=Potri.007G012200.1.v4.1 annot-version=v4.1 MTELNNPDNDDPFLVQYQPSELKIASEFLSTWLPFLSRDLCRDCTKTLSDRIRSLSVIVELKGEDKSGDSPKLNDKVELSNGNCCSDGNCENNSVGSLKE EDDTNSIVSWKDGTPGWSETPPMSEASTSGFHSERHLGMSWADMAQDDELAKEEKELEQQELNKREVNVNDSAGDLRITKVVGKPTTLAYEQSEYNRFMN VKRKKEFMCYEKVNGKLTNILQGLELHMDIFSTAEQKRIVDHVYALKEKGKKGELKEQTYSAPQKWMRGKGRVTLQFGCCYNHVTDKNGNPPGIVQDEMV DPIPVLFKVIIRRLVRWHVIPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNMLFGSHLKIVGVGDFDGPIAIPLPVGSALVLNGNAAD VAKHCVPSVHKRRISITFRKMDEAKRPIGFIPDPGLQGIQPLPHELDKTRRLNSPKSEPYMKRRPFDKEGKMEGRRFAENGSQSEPDYTSQSRRPAAYQR RIKENIGRADG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Potri.007G012200 [exp]	0	1
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Potri.009G143700 [exp]	1.73	0.6939
AT5G45030			Trypsin family protein (.1.2)		Potri.011G143200 [exp]	3.60	0.7177
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Potri.004G057300 [exp]	6.00	0.6841
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Potri.012G078400 [exp]	6.32	0.6726
AT5G49610			F-box family protein (.1)		Potri.007G027300 [exp]	16.00	0.6424
AT3G14250			RING/U-box superfamily protein...		Potri.003G187700 [exp]	16.79	0.7025
AT4G24210		SLY1	SLEEPY1, F-box family protein ...		Potri.002G122300 [exp]	22.84	0.6130
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Potri.008G161700 [exp]	26.98	0.5875
AT3G12830			SAUR-like auxin-responsive pro...		Potri.005G096400 [exp]	28.98	0.5695
AT4G37300		MEE59	maternal effect embryo arrest ...		Potri.007G049800 [exp]	33.76	0.6131

Compare expression of checked genes

Potri.007G012200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.