Plant FIBer expression Database

Potri.007G012600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G17990 380 / 4e-132 unknown protein
AT5G66250 315 / 8e-107 kinectin-related (.1.2.3.4)
AT4G36105 183 / 3e-56 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G115500
[exp]
610 / 0 AT2G17990 385 / 6e-134 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041920
[exp]
426 / 2e-150 AT2G17990 334 / 3e-114 unknown protein
Lus10028465
[exp]
405 / 2e-141 AT2G17990 312 / 6e-105 unknown protein
PFAM info
Representative CDS sequence
>Potri.007G012600.2 pacid=42764973 polypeptide=Potri.007G012600.2.p locus=Potri.007G012600 ID=Potri.007G012600.2.v4.1 annot-version=v4.1
ATGGCAGGAGAGGATGTCGACTTGTCAAGTTTGACGTTGCAAGTTGGAGAAACTCAGGAAACGTGGAAGCAGGAGATGGAAAGGCGACAGTCTCAAGTGG
ATGTGTTACAAGTGAAGCTTATGGAGGTGAAGGCTTGTGTACAAGGGTCGGAGGAACATGCAAAGGAGATGGAGGTTCTTTGGCGAAGAGTGAAAACAAC
CTCGACATTGTTGACTTATTTAAAAGCAAAAGCACGAGTCTTTGCTGTTCCTGAGTTAGCTCACACATCATGTGGAATAAAGGAATTAGAAGGAGTGGGG
CTTGTTGACAGGAATGGAACTCCATTGTCCAGTTGGTCCCGGGATGTTGATCTTTCTTCATTTGGCCCGGATGAAGAATCATGTATTAGACTTAGAAAGC
AACAAGGAAGCTATGATGAACAAGACGAAGCTTATATTGGTGAATTACTCAAGTCTGTGCAGATGGTATCCGATGTGATGGAAGGTCTTGTTAAAAGAGT
TATAATGGCAGAATCTGAAACTGCACTGGAGAAAGATAAGGTAACTTTAGGTCAGGAAGAAATTAGAAGGAAAGCAATCCAAATTGACAACATGTCTTTG
AAATTAGAGGAGATGGAGCGGTTTGCTCTGGGTACAAATGGTATTTTGAATGATATGCGGAAGAGGGTTGAGGATTTGGTTGAAGAAACATCTAGGCAGA
GGCAATGTGCTGCAGAAAATGAGCAAGAGCTTTGCCGAGTGAAAAGGGACTTCGAGTCTCTAAAATCCTATGTTAGCAGTCTCATTAGTGTCAGAGAGAC
ACTTCTTTCATCAGAGAGGCAATTTCAAACTATTGAGAGGCTTTTTGAACGGCTAGTTGCGAAGACAACACAATTGGAGGGTGAGAAAATGCAGAAAGAG
ACTGAAGTTCAGAAACTTATGGAAGAGAATGTGAGGTTGAGTGCCCTTCTTGATAAGAAAGAGGCTCAACTTCTGGCCATGAATGAACAATGCAAGTTAA
TGGCCCTGAATGCTTCAAATATTTGA
AA sequence
>Potri.007G012600.2 pacid=42764973 polypeptide=Potri.007G012600.2.p locus=Potri.007G012600 ID=Potri.007G012600.2.v4.1 annot-version=v4.1
MAGEDVDLSSLTLQVGETQETWKQEMERRQSQVDVLQVKLMEVKACVQGSEEHAKEMEVLWRRVKTTSTLLTYLKAKARVFAVPELAHTSCGIKELEGVG
LVDRNGTPLSSWSRDVDLSSFGPDEESCIRLRKQQGSYDEQDEAYIGELLKSVQMVSDVMEGLVKRVIMAESETALEKDKVTLGQEEIRRKAIQIDNMSL
KLEEMERFALGTNGILNDMRKRVEDLVEETSRQRQCAAENEQELCRVKRDFESLKSYVSSLISVRETLLSSERQFQTIERLFERLVAKTTQLEGEKMQKE
TEVQKLMEENVRLSALLDKKEAQLLAMNEQCKLMALNASNI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G17990 unknown protein Potri.007G012600
[exp]
0 1
AT5G02440 unknown protein Potri.001G238900
[exp]
4.79 0.7795
AT3G11730 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPAS... Potri.003G004000
[exp]
8.94 0.7430
AT1G18610 Galactose oxidase/kelch repeat... Potri.005G013000
[exp]
8.94 0.7349
AT5G57123 unknown protein Potri.018G140500
[exp]
10.00 0.7079
AT1G02840 ATSRP34, SR1, S... Serine/Arginine-Rich Protein S... Potri.014G129900
[exp]
10.39 0.7319
AT1G47230 CYCA3;4 CYCLIN A3;4 (.1.2) Potri.002G121500
[exp]
12.40 0.7597 CYCA3.1
AT1G73590 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORME... Potri.012G047200
[exp]
15.87 0.7056 PIN7,Pt-PIN1.2
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Potri.004G147000
[exp]
16.30 0.7287
AT5G13960 SDG33, KYP, SUV... SET DOMAIN PROTEIN 33, KRYPTON... Potri.014G143900
[exp]
18.00 0.7455
AT5G49890 ATCLC-C, CLC-C chloride channel C (.1) Potri.003G001500
[exp]
20.24 0.7505 CLC.3

Potri.007G012600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.