Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45600 339 / 5e-118 TAF14b, GAS41 TBP-ASSOCIATED FACTOR 14B, GLIOMAS 41, YEATS family protein (.1.2) AT2G18000 296 / 3e-101 TAF14 TBP-associated factor 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G164500 [exp] 355 / 5e-124 AT5G45600 411 / 1e-146 TBP-ASSOCIATED FACTOR 14B, GLIOMAS 41, YEATS family protein (.1.2) Potri.009G126200 [exp] 337 / 2e-117 AT5G45600 379 / 4e-134 TBP-ASSOCIATED FACTOR 14B, GLIOMAS 41, YEATS family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007555 [exp] 325 / 2e-112 AT5G45600 428 / 3e-153 TBP-ASSOCIATED FACTOR 14B, GLIOMAS 41, YEATS family protein (.1.2) Lus10012188 [exp] 305 / 1e-103 AT5G45600 408 / 1e-144 TBP-ASSOCIATED FACTOR 14B, GLIOMAS 41, YEATS family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF03366 [poplar] [flax] YEATS YEATS family
Representative CDS sequence Show only first row Show all	>Potri.007G012700.6 pacid=42766615 polypeptide=Potri.007G012700.6.p locus=Potri.007G012700 ID=Potri.007G012700.6.v4.1 annot-version=v4.1 ATGCCCCACACGACAACTCCATTACCCTCGAAAACAGGCATTCAACTAGAAGATGTTGAGTCTGCTGCAAAACCTCAACGCATCAAACCCACTGATTACA CCGACAACAACATAAACCAGGATGAAAACAAGAGGCTTAAAGATGTTGAAATCAGTGTTCCGGTGGTATATGGAACTATGGCATTTTACCTTGGTAAAAA GGCCAATGAGTTACAGTCTCATAAATGGACAGTGTATGTACGCGGAGCGACGAATGAGGATCTTGGTGTAGTGATAAAGCAAGTCGTGTTTCAATTGCAT CCTAGTTTTGATAACCCTATAAGAGTTGTTGAATCTCCACCATTTGAGTTATCTGAATGTGGTTGGGGTGAATTTGAAATTTGTATCTCCATACTTTTTC ATGACGATGTCTGTGATAAGCATGTGGACTTGTTCCACTTATTGAAGTTGTATCCTGATGCTGAAAGTGGTCCACAGTCAACCAAGAAACCTGTTGTTGT GGAAACTTATAATGAGATTGTCTTTCCTGACCCCTCAGAGAACTTTTTGGCTCGCGTGCTGAATCATCCTGCTGTATATGTGCCACGACTTCCTGCTGGA TTTAACTTCCCTGCTCCTGTTCCAAGCCCAAATATGAATGTGAAAGGGAAAGATGATACCAAAAACCATCCATTGAATCACTGGTTCATAAATTTTTCAG AGGCAGATGAGCTTTTGAAACTTGCATCTGCTCGTCAGCAGGTGCAAGATCATATTCTTAAGCTGAGAAGACAATTGAGCATGTTAGATGGACCACCTCA ACCATCAAAACTAGCCTACGGTATGATATCTGAATGTACATGA
AA sequence Show only first row Show all	>Potri.007G012700.6 pacid=42766615 polypeptide=Potri.007G012700.6.p locus=Potri.007G012700 ID=Potri.007G012700.6.v4.1 annot-version=v4.1 MPHTTTPLPSKTGIQLEDVESAAKPQRIKPTDYTDNNINQDENKRLKDVEISVPVVYGTMAFYLGKKANELQSHKWTVYVRGATNEDLGVVIKQVVFQLH PSFDNPIRVVESPPFELSECGWGEFEICISILFHDDVCDKHVDLFHLLKLYPDAESGPQSTKKPVVVETYNEIVFPDPSENFLARVLNHPAVYVPRLPAG FNFPAPVPSPNMNVKGKDDTKNHPLNHWFINFSEADELLKLASARQQVQDHILKLRRQLSMLDGPPQPSKLAYGMISECT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.007G012700 [exp]	0	1
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Potri.004G159000 [exp]	2.44	0.8942
AT5G54010			UDP-Glycosyltransferase superf...		Potri.017G041900 [exp]	3.46	0.8940
AT3G01930			Major facilitator superfamily ...		Potri.017G064201 [exp]	4.00	0.8788
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059101 [exp]	5.29	0.8805
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Potri.010G141501 [exp]	7.74	0.8449
AT5G19910		MED31	SOH1 family protein (.1.2)		Potri.012G113400 [exp]	10.81	0.8548
AT5G46560			unknown protein		Potri.001G146500 [exp]	12.64	0.7880
AT5G47540			Mo25 family protein (.1)		Potri.016G011300 [exp]	13.41	0.8558
AT5G41685			Mitochondrial outer membrane t...		Potri.018G146602 [exp]	15.03	0.7738
AT3G48880			RNI-like superfamily protein (...		Potri.012G106700 [exp]	17.66	0.8360

Compare expression of checked genes

Potri.007G012700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.