Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrcMsrA5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18030 361 / 2e-127 Peptide methionine sulfoxide reductase family protein (.1.2) AT5G61640 108 / 9e-29 PMSR1, ATMSRA1 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) AT5G07460 107 / 3e-28 PMSR2, ATMSRA2 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 2, peptidemethionine sulfoxide reductase 2 (.1) AT4G25130 103 / 2e-26 PMSR4 peptide met sulfoxide reductase 4 (.1) AT5G07470 98 / 9e-25 PMSR3, ATMSRA3 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 3, peptidemethionine sulfoxide reductase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G091100 [exp] 118 / 1e-32 AT5G61640 251 / 9e-86 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Potri.015G087600 [exp] 115 / 1e-31 AT5G61640 261 / 8e-90 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Potri.012G115800 [exp] 107 / 9e-28 AT4G25130 351 / 3e-123 peptide met sulfoxide reductase 4 (.1) Potri.015G112268 [exp] 106 / 1e-27 AT4G25130 351 / 4e-123 peptide met sulfoxide reductase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041922 [exp] 361 / 2e-127 AT2G18030 370 / 9e-131 Peptide methionine sulfoxide reductase family protein (.1.2) Lus10028467 [exp] 358 / 2e-126 AT2G18030 364 / 1e-128 Peptide methionine sulfoxide reductase family protein (.1.2) Lus10043002 [exp] 112 / 1e-29 AT4G25130 346 / 5e-121 peptide met sulfoxide reductase 4 (.1) Lus10032504 [exp] 111 / 2e-29 AT4G25130 348 / 6e-122 peptide met sulfoxide reductase 4 (.1) Lus10033039 [exp] 107 / 1e-28 AT5G61640 256 / 6e-88 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Lus10013673 [exp] 69 / 4e-14 AT5G07470 185 / 4e-60 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 3, peptidemethionine sulfoxide reductase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01625 [poplar] [flax] PMSR Peptide methionine sulfoxide reductase
Representative CDS sequence Show only first row Show all	>Potri.007G012900.1 pacid=42765013 polypeptide=Potri.007G012900.1.p locus=Potri.007G012900 ID=Potri.007G012900.1.v4.1 annot-version=v4.1 ATGGCTTGCGCAGAGAGCAATAGTGCCACCCTTCTCCATCTCCTAACCCTTCTATTACTAACAATTTCACTACCCTATAAATCGCTGTCCATTCGAATAC CGGATCATGTTTCCACCGCCATTAGAAACCCGCCACCCGATTACCCATTAAAAACAGCAGTTTTCGCCCTCGGTTGTTTTTGGAGATCTGAAGCCGTGTT TGGTTGCTTGAATGGTGTTGTACGGACCACTGTTGGTTATTGTGGCGGATCCAAATTGAACCCCGTTTACAGAAGCTTAGGTGATCATGCAGAGTCCGTA CAGGTAGAGTATGACCCGAAGGTGATTAGTTACAGTCAACTCTTGGAGGTATTTTGGGCTAGTCATGATTCAAGGCAAGTGTTTGGGCAAGGTCCTGATG TGGGTAATCAATATAGGTCTGTTATTTTCACTAATGGAACTGAAGAGCGTAGATTGGCTGGTGTTAGCAAAGAAAGAGAGCAGTTGAAGTTGAGGAGCAG TGTTGTGGTTACTCAAATTCAACAGCTTGGAACATTTTATCCTGCAGAGCCAGAACATCAGAAATTTGAGCTCAAGCAGAATCCATTTATTCGTCAGCTG ATGGGAAACTTGCCTGAAGCGGACCTTGAGAATTCAAGTTTGGCAGCAAAATTAAATGGCTATGCAGCAGAGCTCTGCCCTCCACGCATTCAAAAGCAGA TCAATGCAAAGATCAATGACATTCTTAGAAAAGGTTGGCCTGTTCTGAGAGATGTATAG
AA sequence Show only first row Show all	>Potri.007G012900.1 pacid=42765013 polypeptide=Potri.007G012900.1.p locus=Potri.007G012900 ID=Potri.007G012900.1.v4.1 annot-version=v4.1 MACAESNSATLLHLLTLLLLTISLPYKSLSIRIPDHVSTAIRNPPPDYPLKTAVFALGCFWRSEAVFGCLNGVVRTTVGYCGGSKLNPVYRSLGDHAESV QVEYDPKVISYSQLLEVFWASHDSRQVFGQGPDVGNQYRSVIFTNGTEERRLAGVSKEREQLKLRSSVVVTQIQQLGTFYPAEPEHQKFELKQNPFIRQL MGNLPEADLENSSLAAKLNGYAAELCPPRIQKQINAKINDILRKGWPVLRDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18030			Peptide methionine sulfoxide r...		Potri.007G012900 [exp]	0	1	PtrcMsrA5
AT5G57460			unknown protein		Potri.006G168200 [exp]	1.73	0.8786
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Potri.001G165600 [exp]	2.44	0.9154	Pt-SEC22.1
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Potri.018G096077 [exp]	5.29	0.8917
AT2G39960			Microsomal signal peptidase 25...		Potri.008G064700 [exp]	8.36	0.8666
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.013G156900 [exp]	9.16	0.8767
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Potri.018G039200 [exp]	10.09	0.8724
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Potri.010G191100 [exp]	11.74	0.8423	Pt-SYP31.1
AT5G22780			Adaptor protein complex AP-2, ...		Potri.009G150300 [exp]	12.00	0.8663
AT5G56510		APUM12	pumilio 12 (.1)		Potri.002G120900 [exp]	16.97	0.8116
AT5G11460			Protein of unknown function (D...		Potri.006G245200 [exp]	18.00	0.8094

Compare expression of checked genes

Potri.007G012900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.