Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19860 109 / 1e-25 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G51180 89 / 1e-18 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G66270 88 / 2e-18 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G115901 [exp] 216 / 2e-67 AT5G66270 75 / 5e-16 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G116001 [exp] 218 / 3e-67 AT1G19860 122 / 3e-32 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.002G025100 [exp] 121 / 1e-29 AT1G19860 319 / 8e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G236300 [exp] 114 / 3e-27 AT1G19860 318 / 2e-105 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024316 [exp] 99 / 7e-22 AT1G19860 261 / 1e-83 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10012404 [exp] 97 / 3e-21 AT1G19860 256 / 1e-81 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G013600.1 pacid=42764998 polypeptide=Potri.007G013600.1.p locus=Potri.007G013600 ID=Potri.007G013600.1.v4.1 annot-version=v4.1 ATGAAGCGATCGAGGAAATCAAACAGGGTTTCGTGGGCACCAGGTCTTTATCTTTGTCAGGTGAGGCTGTTTCTATCCGAGGATTGTCCTTCAGAAGTTG GTGGACAAGTCCGAGATCTTCTTCAGAAAAATGCATCGCGGCTTTTGCCGATTTCAAGCAGTAAGGATTCGAATGACCTTCCCCCTGGATTTGAAGGCAC TCACTTTTTGAATCCATGTATAAAGGAATTATCCTGCATTCCTAGGGTTCAATGGAAGTGCCCACCAAATTTTGTTGTGAATTACAACTGGCATGTCACG GATGGAGAAGAAAGCCAGGAGTCAGAGGCTCAAAAACTGAGGGAAATGAGAGTTCTTGAAGCAGTTTATCCACGCCCTTCTTCTGTTCCTCCCAGCCCTG CTGTTTCTTTAGACGTGGAAGAGGAAAATTATGATGATAGCCTCACTCCAATTATCCCTCTCATTCCTGTTGAAGAAGAAGAAGCTGCAGAAATGCCACC TGCTTTGACAGAACCACTAAAAAACCCGACAACTTCCCTGTCACCAGCATTGCCTCCAGTTTTATTGTCATCTGGAATCCTGAACTCTTCAAAGTGCAAC ACCCCTGCTCTAAATCCACCTGCAAGTCAAAAACCAGAACTTGGAAGATTACCTGATCCAGGTACTCATCCAATCACAGCAGCTTCTGCTGCTGTTACTG CTATCATGAAAAGCAAGGAGCAGGGAGGCTTGATTGACACTGATTTACTTGTTAAAATCTTTAGAGACCCCAAAATGGTTGACAAACTTATCAGTGGCAA TCAAACACCTCCTGTTACATCTAGGCCAGTTTCCAGTTCCAGGTCCCCATTGTATGCAAAACCTGCCATGGTTTCAGCACCATCCCCTGCTAATGGAAAC TTGCAGCACCTACCTAGTGAGGAGTTGCCCTGGTCAAAGCCAACGGGCCAGATTCCCATACCCTGTCCAAAACCCGCAGTGCATTTTCCATCAATGCCTT ATGATGGAAGCTTGCACCATCAACTTAGTCAGGTACAAACGACAGTAACTAGAACCTCTATGCATCAGGATGCTGTTCCAGCAACTGGATTAGGAGTTCC TGTGCCCATTCAAGAACCTGGCAAAGTCTCAGCACCTAGGCCACCAGTTGGGCACTTGTTTTCCGCGTCTAATTCAATGCAAACTACACCAAGCCTTGTG CCTACAGAATCAAAAACACCCCAAATATCTTATTTCAAAGACATCCATCCCAACCCAATGTTTGATTTGGTGAAATCCACTCTGGTTAAGAAGCCTAAAC AGCCCATCAGTGTTCCTCAAGCAGGAAAGAAAACTAACCTTGTGAAGGATGTGAACTACATTAAGAACCTCATAAAGGAACATGGAACGGCAAAGAAAGA AATGAAGGATCGAAATCTATTCCATAATGGAAGTCATTATTATAATCATACTCAAAACCCAGAATCGATACAAAACTCGAAAAACAGAGAATTGAAGCCC AAGTTTCAGAAGCCTTGTATGTATTTTAGAACTCCCAAGGGATGCCGGAATGGCTCTGATTGCCATTTCCAGCATGATATGTCATTCCAGTTTCAGACTG GTAGTGGTGATTCGAAGCTCCAAGTCGCAAAGAGAATGAAATTTAGTGGGGAAATCACTGCCGGGAGGACTTGA
AA sequence Show only first row Show all	>Potri.007G013600.1 pacid=42764998 polypeptide=Potri.007G013600.1.p locus=Potri.007G013600 ID=Potri.007G013600.1.v4.1 annot-version=v4.1 MKRSRKSNRVSWAPGLYLCQVRLFLSEDCPSEVGGQVRDLLQKNASRLLPISSSKDSNDLPPGFEGTHFLNPCIKELSCIPRVQWKCPPNFVVNYNWHVT DGEESQESEAQKLREMRVLEAVYPRPSSVPPSPAVSLDVEEENYDDSLTPIIPLIPVEEEEAAEMPPALTEPLKNPTTSLSPALPPVLLSSGILNSSKCN TPALNPPASQKPELGRLPDPGTHPITAASAAVTAIMKSKEQGGLIDTDLLVKIFRDPKMVDKLISGNQTPPVTSRPVSSSRSPLYAKPAMVSAPSPANGN LQHLPSEELPWSKPTGQIPIPCPKPAVHFPSMPYDGSLHHQLSQVQTTVTRTSMHQDAVPATGLGVPVPIQEPGKVSAPRPPVGHLFSASNSMQTTPSLV PTESKTPQISYFKDIHPNPMFDLVKSTLVKKPKQPISVPQAGKKTNLVKDVNYIKNLIKEHGTAKKEMKDRNLFHNGSHYYNHTQNPESIQNSKNRELKP KFQKPCMYFRTPKGCRNGSDCHFQHDMSFQFQTGSGDSKLQVAKRMKFSGEITAGRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G013600 [exp]	0	1
AT1G28280			VQ motif-containing protein (....		Potri.004G044800 [exp]	2.82	0.8068
AT1G80450			VQ motif-containing protein (....		Potri.006G266600 [exp]	3.16	0.7700
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Potri.019G081500 [exp]	18.13	0.7782	MYB6.2,MYB168
AT3G20250		APUM5	pumilio 5 (.1)		Potri.008G004300 [exp]	18.65	0.7825
					Potri.010G002600 [exp]	19.18	0.7356
AT4G04720		CPK21	calcium-dependent protein kina...		Potri.011G003400 [exp]	19.20	0.7832
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Potri.018G109500 [exp]	20.34	0.7422
AT2G35230		IKU1	HAIKU1, VQ motif-containing pr...		Potri.001G142400 [exp]	20.68	0.7858
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Potri.011G082000 [exp]	26.15	0.7792
AT5G08139			RING/U-box superfamily protein...		Potri.015G047900 [exp]	31.60	0.7700

Compare expression of checked genes

Potri.007G013600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.