Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GMD1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51160 670 / 0 GMD2, MUR_1, MUR1 MURUS 1, GDP-D-MANNOSE-4,6-DEHYDRATASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G66280 669 / 0 GMD1 "GDP-D-mannose 4,6-dehydratase 1", GDP-D-mannose 4,6-dehydratase 1 (.1) AT2G47650 59 / 3e-09 UXS4 UDP-xylose synthase 4 (.1.2) AT3G62830 56 / 3e-08 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G30440 55 / 3e-08 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT3G53520 52 / 4e-07 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT1G78570 51 / 1e-06 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT1G53500 49 / 4e-06 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT4G00110 48 / 8e-06 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT3G23820 47 / 1e-05 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G116200 [exp] 734 / 0 AT3G51160 661 / 0.0 MURUS 1, GDP-D-MANNOSE-4,6-DEHYDRATASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G204400 [exp] 62 / 1e-10 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 58 / 3e-09 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G214000 [exp] 57 / 7e-09 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.001G320000 [exp] 54 / 8e-08 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.017G059100 [exp] 53 / 2e-07 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.011G156100 [exp] 47 / 9e-06 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G178500 [exp] 47 / 2e-05 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.001G237200 [exp] 46 / 2e-05 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041823 [exp] 686 / 0 AT5G66280 677 / 0.0 "GDP-D-mannose 4,6-dehydratase 1", GDP-D-mannose 4,6-dehydratase 1 (.1) Lus10028373 [exp] 525 / 0 AT5G66280 519 / 0.0 "GDP-D-mannose 4,6-dehydratase 1", GDP-D-mannose 4,6-dehydratase 1 (.1) Lus10030368 [exp] 61 / 6e-10 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003605 [exp] 57 / 8e-09 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10015038 [exp] 57 / 1e-08 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10006510 [exp] 53 / 2e-07 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10010942 [exp] 50 / 1e-06 AT1G78570 1130 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10025293 [exp] 50 / 2e-06 AT3G53520 715 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10020776 [exp] 50 / 2e-06 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10019967 [exp] 50 / 2e-06 AT4G30440 688 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF16363 [poplar] [flax] GDP_Man_Dehyd GDP-mannose 4,6 dehydratase
Representative CDS sequence Show only first row Show all	>Potri.007G013900.1 pacid=42765082 polypeptide=Potri.007G013900.1.p locus=Potri.007G013900 ID=Potri.007G013900.1.v4.1 annot-version=v4.1 ATGGCATCCGAATCAAACCAACCCGGATCCGACTCCACTATTCCTGTCAACGGCGAAATCACACCCAAAATCGCCCTGATCACCGGTATAACCGGCCAAG ATGGTTCTTATCTTACCGAATTCCTCCTGAACAAAGGCTATGAAGTTCATGGCTTGATCCGTCGGTCATCCAATTTCAATACGCAGCGGATTAACCATAT TTATATAGATCCACACAATGCTCATAAGGCCCGAATGAAACTCCACTATGCAGATCTAAGCGACGCGTCGTCTCTCCGTCGTTGGCTCGACACCATCAAC CCCGACGAAGTCTATAACCTGGCGGCCCAATCACACGTGGCTGTCTCTTTCGAAATCCCTGATTACACGGCGGATGTCGTCGCCACCGGAGCCCTCCGCC TTCTTGAGGCGGTGAGATCTCATATTGCCGCGACAGGGCGGAGCCATATCAAGTATTACCAAGCGGGATCTTCGGAGATGTTTGGATCTACGCCGCCTCC GCAATCAGAGACCACCCCGTTTCATCCAAGATCCCCATACGCGGCGTCAAAATGCGCGGCGCATTGGTATACTGTCAATTACAGGGAAGCTTATGGGTTG TATGCTTGCAATGGGATTCTTTTCAACCATGAATCTCCACGTAGGGGAGAGAATTTTGTGACCCGAAAGATTACGAGAGCTGTTGGGAGAATTAAGGTGG GGTTGCAGAATAAGCTGTTTTTAGGGAATTTGCAGGCGTCGAGGGATTGGGGTTTCGCAGGGGATTACGTGGAAGCAATGTGGATGATGTTGCAGCAGGA AAAGCCTGATGATTACGTGGTTGCGACGGAGGAGTCGCATACGGTGGAGGAGTTTTTGGATGTGGCATTTGGATATGTTGGATTGAATTGGAAGGATCAT GTTGTGATTGATAAGAGGTATTTTAGGCCTGCTGAAGTGGATAATTTGAAAGGGGATTCGAGTAAGACGAGGAAAGTGCTTGGTTGGAAGCCTAAAGTTG GGTTTGAGCAATTGGTGAAGATGATGGTTGATGAAGATATTGATTTAGCCAAGAGGGAGAAGGTTCTTGTTGATGCTGGCTATATGGATGCCCAGCAGCA ACCTTGA
AA sequence Show only first row Show all	>Potri.007G013900.1 pacid=42765082 polypeptide=Potri.007G013900.1.p locus=Potri.007G013900 ID=Potri.007G013900.1.v4.1 annot-version=v4.1 MASESNQPGSDSTIPVNGEITPKIALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQRINHIYIDPHNAHKARMKLHYADLSDASSLRRWLDTIN PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIAATGRSHIKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGL YACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQNKLFLGNLQASRDWGFAGDYVEAMWMMLQQEKPDDYVVATEESHTVEEFLDVAFGYVGLNWKDH VVIDKRYFRPAEVDNLKGDSSKTRKVLGWKPKVGFEQLVKMMVDEDIDLAKREKVLVDAGYMDAQQQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51160		GMD2, MUR_1, MU...	MURUS 1, GDP-D-MANNOSE-4,6-DEH...		Potri.007G013900 [exp]	0	1	GMD1.1
AT4G33380			unknown protein		Potri.014G031900 [exp]	1.00	0.8036
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G229400 [exp]	2.44	0.7406
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.019G059200 [exp]	2.82	0.7491
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Potri.014G129200 [exp]	6.00	0.6987	UXS2.2
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Potri.006G179100 [exp]	7.07	0.7415
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Potri.014G162900 [exp]	8.36	0.7270
AT4G38040			Exostosin family protein (.1)		Potri.005G147500 [exp]	13.41	0.7503
AT3G61790			Protein with RING/U-box and TR...		Potri.002G171500 [exp]	17.54	0.7010
AT1G07060			unknown protein		Potri.001G281500 [exp]	21.35	0.7214
AT4G37880			LisH/CRA/RING-U-box domains-co...		Potri.015G128600 [exp]	29.17	0.6763

Compare expression of checked genes

Potri.007G013900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.