Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44710 324 / 2e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G00830 147 / 2e-37 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G52660 114 / 2e-26 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G71770 83 / 5e-16 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT4G34110 81 / 1e-15 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G22760 80 / 4e-15 PAB3 poly(A) binding protein 3 (.1) AT2G23350 78 / 1e-14 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G49760 76 / 5e-14 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT2G36660 66 / 6e-11 PAB7 poly(A) binding protein 7 (.1) AT4G16280 66 / 9e-11 FCA RNA binding;abscisic acid binding (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G116400 [exp] 1083 / 0 AT2G44710 325 / 1e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G139700 [exp] 362 / 9e-113 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G051500 [exp] 360 / 3e-112 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G212400 [exp] 146 / 3e-37 AT3G52660 473 / 1e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G079200 [exp] 144 / 1e-36 AT3G52660 449 / 4e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G163400 [exp] 132 / 2e-32 AT3G52660 400 / 9e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G201900 [exp] 132 / 2e-32 AT3G52660 422 / 2e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G178200 [exp] 129 / 2e-31 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.014G104500 [exp] 128 / 3e-31 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033990 [exp] 615 / 0 AT2G44710 301 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012785 [exp] 612 / 0 AT2G44710 305 / 4e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10028162 [exp] 359 / 1e-111 AT2G44710 675 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002689 [exp] 135 / 1e-33 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10021351 [exp] 134 / 5e-33 AT3G52660 478 / 3e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10030207 [exp] 133 / 1e-32 AT4G00830 601 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10043390 [exp] 127 / 6e-31 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10034195 [exp] 124 / 6e-30 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017026 [exp] 82 / 5e-16 AT3G52660 320 / 2e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002835 [exp] 79 / 6e-15 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.007G014100.1 pacid=42766720 polypeptide=Potri.007G014100.1.p locus=Potri.007G014100 ID=Potri.007G014100.1.v4.1 annot-version=v4.1 ATGAAAACTACAAAACCAGCCGCAATTAAAAAGACGCCGGTGGGAAGGAAACCTGCCGCTGTCAAAGCCGCTCCTGATTCTGCCACCGAGGAATCACCGG TTCCAAAAACCCCACCCAACGCCAAGCGGACACAAAATAGCGACATGACACCGTCGCCAATTGCCGGTTCTGCTTCAAAACTTGAACAATCATCAGTTGA TGGAACAAATATAGAAACGGATGTGAGTATGGTAACACTGGAAACTACAAAACCTCTTCCGATTAAAAAGAAGGTTGTGAGGAGAGTGGTGAAGGTAGTG AAGAAAACCCCTGCTAATGCAAAAGCTCTTTTGGAGCAAACCCCGACAACTGTGGTTGCTGCGAAGTCTAAGGTTGAAGAAAGGGAAAAGGAGGCGGAAC TTGCTGCTGATAATGTTGGAGAATCTATAAAGAAGAAAGGAGTTGCAATGGGAGTGGAAGAATCTAAGGTTGAAAGTGTTGCTGTTTCTGTAAAGGAGGA GGAAAGTGTGGAAGAACCTGTGGTCGATTCTAGGAAGGAGGTTGAAGCGGTTAATGATAGGGTTGGGGAGTCTGTTAAAAGGGAACGAACTGTGGTGGAT ATTCCTGCTGATGAGGTTGTGGAAGTATCTAAGAATGAAGAACCTAACAGAGTGGGAAAGGGGGTTAATGAGGGTGAGAAGAAAGACGTGGACGATGAAG TGGAGGCCAGAAATGAGGCTGTCATGATGGAAGGAAGTATGGAGGAACACGTTCGAAGAGAAGAGACTCAACATGAGCAAGATGAGTATGGTGGTGATGA CGGGTATGAGGAGTATGGAGATAGAGTGGACTTTGAAGATCCTGTTGAGGATGACTTTGAAGATCCAGATGAGCCTGTTGAAGAAGCTGCTGCAATGGAA GAGGAACGCAGGGAACTAACAGCTGTTGCAAAGGAGCGTAAGATTAAGAAAGAATATGAGATATTTGTTGGTGGATTGGATAGGGATGCTACAGAGGAGG ATTTGAGAAAGGTTTTTGAGAAGATTGGTGAAGTAGTTGAAGTTCGATTGCACAAAAATCTTTCAACAAATAGGAATAAGGGATATGCATTTGTGAAATT TGCAAACAAGGGGCATGTTAAACGCGCTTTGTCTGAAATGAAAAACCCTGTGATTCGTGGAAAGCGATGTGGGACAGCACCAAGCGAGGACAATGATACA TTGTTCTTGGGCAATATATGCAACACATGGACAAAGGAAGCTATAAGACAAAAGTTGAAGGATTATGGCGTTGAAGGTGTTGAGAACATCACTGTTGTAC CCGATGCTCAACATGAAGGGAGAAGTCGTGGTTTTGCATTTCTTGAGTTTGCTTGTCATACTGATGCAATGCTTGCTTACAAGCGGCTTCAGAAGCCTGA TGTTGTATTTGGTCATCCAGAGAGAACTGCCAAAGTGGCATTTTCTGAACCTATACGTGAGCCTGACCCTGAAATTATGGCTCAGGTGAAGACTATATTT CTTGATGGCCTTCCTCCTCACTGGGATGAAGATCATGTTAGGGAGTGCGTGAAAGGTTATGGGGAGATTGTACGAATTGTCCTGGCACGGAATATGTCAA CCGCCAAGAGAAAGGATTTTGGATTCGTCGACTTCTCTACGCATGAAGCTGCGGTTGCTTGTATTGAAGGAATAAATAATAGAGAATTTGGCAATGGTAA CACAAAGATGAGAGTTAAAGCGAGGCTGTCAAATCCATTGCCAAAAACTCAGGCTGTGAAGGGTGGAATGTGTGGTGGCTTTCGAATTGGTCATTCTGGA AGTGGAAATTATTTAAGATTTGGAAGGGGTTTTGGGCGGGGCGGGCATCATTCAAACTGGGCGAATTTTCAACGTGGTAGGGGTTTCTATCAACGAGAAC ATGGTCAAACTAGTAGAATGGGTCCCCGTGAGTATGACTATAATGATCGATATGACATGCTTCCTGGGAGGCAAGGAGGAAGAAGGGGTTCTTTCAGAGG AGGTTATCAAACAGCTAGTAGAGGTATGGCTGCTGGGCCATCAAGATCTAATATCAATCGAGCTTGGCACGAGACCCCTGAGCGAGGACATAGGGGCTAT GTTTCTTCAAGGAGGCAACCATTTTCTCCTGAAGAATCCTTTGACAGACGTTTCAATGGAAGGCACTTTGATGACCCCTATTTTTATGATGATGGTTCAC ATGGGATGAAACGATCATTTTATATGACTGACCAAGATCCTGATTACATGGAACCCAGTAGGCTTCGACCCCGGTTAGATTTCGCTGATCCCCGAGTAGA TTATGCTGATCCGGCAGCTTCATTTCGTGGGACACATTATCGTGATACCTATGGAGCAGGCAGTGATCCCTACTTTCATGAATATCGTGGTTCTGATTAC GATCCATATCCACCTTATTATGGGAGGGACCACTCATATGGAGGTGGTTACCACTATTAG
AA sequence Show only first row Show all	>Potri.007G014100.1 pacid=42766720 polypeptide=Potri.007G014100.1.p locus=Potri.007G014100 ID=Potri.007G014100.1.v4.1 annot-version=v4.1 MKTTKPAAIKKTPVGRKPAAVKAAPDSATEESPVPKTPPNAKRTQNSDMTPSPIAGSASKLEQSSVDGTNIETDVSMVTLETTKPLPIKKKVVRRVVKVV KKTPANAKALLEQTPTTVVAAKSKVEEREKEAELAADNVGESIKKKGVAMGVEESKVESVAVSVKEEESVEEPVVDSRKEVEAVNDRVGESVKRERTVVD IPADEVVEVSKNEEPNRVGKGVNEGEKKDVDDEVEARNEAVMMEGSMEEHVRREETQHEQDEYGGDDGYEEYGDRVDFEDPVEDDFEDPDEPVEEAAAME EERRELTAVAKERKIKKEYEIFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNLSTNRNKGYAFVKFANKGHVKRALSEMKNPVIRGKRCGTAPSEDNDT LFLGNICNTWTKEAIRQKLKDYGVEGVENITVVPDAQHEGRSRGFAFLEFACHTDAMLAYKRLQKPDVVFGHPERTAKVAFSEPIREPDPEIMAQVKTIF LDGLPPHWDEDHVRECVKGYGEIVRIVLARNMSTAKRKDFGFVDFSTHEAAVACIEGINNREFGNGNTKMRVKARLSNPLPKTQAVKGGMCGGFRIGHSG SGNYLRFGRGFGRGGHHSNWANFQRGRGFYQREHGQTSRMGPREYDYNDRYDMLPGRQGGRRGSFRGGYQTASRGMAAGPSRSNINRAWHETPERGHRGY VSSRRQPFSPEESFDRRFNGRHFDDPYFYDDGSHGMKRSFYMTDQDPDYMEPSRLRPRLDFADPRVDYADPAASFRGTHYRDTYGAGSDPYFHEYRGSDY DPYPPYYGRDHSYGGGYHY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.007G014100 [exp]	0	1
AT1G65440		GTB1	global transcription factor gr...		Potri.006G031900 [exp]	2.64	0.8773
AT1G65440		GTB1	global transcription factor gr...		Potri.016G029200 [exp]	5.47	0.8642
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.007G113300 [exp]	5.47	0.8741	HAF902
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.018G110100 [exp]	6.32	0.8593
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Potri.008G114800 [exp]	7.34	0.8540
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.014G013100 [exp]	8.24	0.8617
AT4G10600			RING/FYVE/PHD zinc finger supe...		Potri.001G448900 [exp]	9.89	0.8360
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G228600 [exp]	11.83	0.8494
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.014G051500 [exp]	12.32	0.8002
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Potri.008G044600 [exp]	12.32	0.8299

Compare expression of checked genes

Potri.007G014100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.