Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36180 1299 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G75640 1100 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 428 / 1e-130 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 405 / 4e-123 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 402 / 7e-122 Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 395 / 1e-118 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 386 / 9e-115 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17750 374 / 1e-111 AtPEPR2 PEP1 receptor 2 (.1) AT5G56040 369 / 8e-110 Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G44700 371 / 2e-109 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G235100 [exp] 1286 / 0 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G027400 [exp] 1231 / 0 AT1G75640 1275 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G139700 [exp] 439 / 2e-135 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 414 / 4e-126 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G009300 [exp] 406 / 4e-123 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.004G065400 [exp] 401 / 4e-121 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G174900 [exp] 397 / 7e-120 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G053400 [exp] 396 / 1e-119 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.015G141200 [exp] 398 / 6e-119 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033924 [exp] 1151 / 0 AT1G75640 1332 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10033926 [exp] 1151 / 0 AT1G75640 1348 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10042177 [exp] 1098 / 0 AT4G36180 1253 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10004266 [exp] 826 / 0 AT4G36180 1061 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10039030 [exp] 400 / 6e-121 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10023323 [exp] 388 / 3e-116 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10032954 [exp] 384 / 3e-115 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036251 [exp] 373 / 3e-110 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10038392 [exp] 369 / 1e-108 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10008849 [exp] 365 / 7e-108 AT1G73080 648 / 0.0 PEP1 receptor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.007G014700.1 pacid=42766158 polypeptide=Potri.007G014700.1.p locus=Potri.007G014700 ID=Potri.007G014700.1.v4.1 annot-version=v4.1 ATGAATCCTATCAAAATGAGTCCTTTCTTTTTCTTTCTCTTACTGTTCACATCCTTCTTGGCCTGCAAATCACAGCAAAACCCACAAACCCAAGCCCTGA CATCCATCAAGCAAAACCTCCACGACCCGCTTGGAGCTTTAACCGGCTGGGATCCAACAACCCCATTAGCTCCATGTGACTGGCGTGGTGTCTTTTGCAC AAACAACCGAGTTACTGAACTTCGTTTACCCCGTCTCCAACTCCGTGGCCAACTCAGTGACCAGTTTGCTTCTTTAACATCTTTACGTAAAATCAGCCTT AGATCAAATTTCTTAAATGGAACATTGCCTCATTCTCTTGCAAAATGCACGCTCTTACGTGCTTTGTTTTTGCAATACAACTCATTTTCCGGCAACCTTC CGCCGGAGATTAGTAACTTAACTAATCTTCAAGTCTTGAACATCGCGCAAAATAGGTTTTCTGGAGAGATTCCTAGATCTCTGCCTGTGAGTTTGAAGTA TCTTGATTTATCATCAAATACATTTTCAGGTTCTATCCCTTCAAGTGTTTCTGACTTGGCGCAGTTGCAGCTTATTAACCTGTCTTACAATCAGTTTTCC GGTTCTATTCCGGCGAGTTTTGGCCAGCTTCAGAGTCTTGAATACCTGTGGCTTGATTATAATATTTTAGAAGGGACTTTACCTTCTGCCATTGCGAATT GCTCTTCGCTTGTGCACTTTAGTGCTAATGGTAATCGTCTTGGAGGTTTGATCCCGGCTGCCATTGGCGAGCTTCCGAAATTGCAAGTTGTTTCGCTTTC GGAAAATAAGTTTGTTGGGGCTGTTCCGACTTCAATGTTTTGTAATGTCTCGGTTTATCCGCCGTCGTTGCGGATTGTTCAGTTGGGGTTTAATGGGTTT AGTGGTGTTGTAGGGCCGGAGTCAGGCGGTTGTTTTAGTGTTTTGCAAGTTCTGGATCTTCAAGAGAATCACATACGTGGAGTTTTTCCTCTGTGGTTGA CACGTGTGGTTACTTTGACAATGTTGGATGTTTCGAGGAATTTGTTTTCTGGTGTTGTTCCGGCTGAGATTGGGAATTTGTCGAGGTTGGAGGAGTTGAA GATGGGTGGTAATGGTTTTAGAGAGGTGGTTCCAGTGGAGATTCAGCAATGTAGGTCACTTCAGGTTCTTGATCTTCATGGGAATGATTTATCAGGGGAA ATCCCTGAGGTTTTGGGTGATCTAAGGGGGTTGAAGGTGTTGTCTCTTGGTGAAAATCAGTTTTCGGGCTCGGTTCCTGGGAGTTTTAGGAATCTTACAG GGCTAGAGACCTTGAATTTGGGTGGTAATGGTTTGAATGGAAGCTTGCCAGATGAGGTTATGGGGTTGAGTAATTTGACTACGCTGGACCTCAGTGGAAA TGGATTCTCAGGTGAAATTCCTGCTACTATTGGGAATTTGAACAGGGTAATGCTCCTGAATCTGAGTGGAAATGGTTTTTCAGGAAGGATACCGTCTAGT TTTGGAAATCTATTGAGGTTAAGTTCTCTTGATTTGAGCAGACAGAGTTTGTCTGGAGAGTTGCCGTCTGAGCTTGCTGGCTTGCCGAATCTTCAGGTGA TTGCTTTGCAGGAGAATATGCTGTCTGGGGATGTTCATGAAGGGTTCAGTAGTTTGTTGGGTTTGCGTTACTTGAACCTCAGCTCCAATGGCTTCTCCGG TCAGATTCCGTTGACTTTTGGGTTTCTCAAGTCATTGGTTGTTTTGTCGTTGTCTAAGAATCACATTTCAGGGTTGATTCCACCAGAGCTTGGCAACTGC TCGGATCTTGAAACCCTTGAGTTAGAGTCAAATTCTTTGACTGGCAATATTCCAGGTGATCTCTCTCGCCTTTTGCACTTGAAAGTGCTTGATTTAGGTA GGAACAATTTATCAGGTGAAATCCCAAATGAAATCTCCAAATGCTCGTCGTTATCCTCATTGTCGTTGGATAGCAATCATCTTTCAGGTAGCATACCGGA TTCATTATCGAATTTATCCAACTTGACATCTTTGGATCTCTCTACTAACAACTTGAGTGGGCAGATTCCTGTCAATCTTGCACAAATCTCTGGCCTGGTA TACCTGAATGTTTCAAGAAATAACCTAGAAGGTGGGATTCCAACATTGCTGGGTTCTAGATTTAACAACCCATCAGCATTTGCAGATAATCCAAGGCTAT GTGGAAAGCCATTGCCTAGAAATTGTGTGGATGTAGAAGCAAGCAATCGAAGGAAAAGGTTGATTCTGTTGATTGTTGTGGTTGTAAGTGGGGCTTGCAT GTTGGCATTATGTTGCTGCTTCTATACATACAGCCTCTTGAGATGGCGCAAGAGACTAAAACAAGGTGCTGCGGGTGAGAAGAAACGGAGCCCAGCAAGG CCTAGCTCAAATGGAAGTGGTGGTCGTGGCAGTACAGATAATGGAGGGCCGAAACTTGTTATGTTTAATAACAAGATCACACTTGCAGAAACAACTGAAG CAACTAGGCAATTCGATGAAGAGAATGTGCTTAGCAGAACTCGATATGGCCTAGTTTTTAAAGCTTGTTATAGTGATGGAATGGTGCTCTCAATCCGAAG ACTCCCGGATGGATCACTAGATGAAAACATGTTCAGGAAAGAAGCTGAATTTCTAAGCAAAGTGAAGCATCGAAACCTAACAGTTCTTCGTGGCTACTAT GCTGGAGCACCAGATATGAGACTCCTGGTCTACGACTACATGCCTAATGGAAACCTTGCCACTCTCCTCCAAGAAGCATCCCACCAAGATGGTCATGTCC TAAATTGGCCAATGCGTCACTTGATAGCTCTCGGAATTGCCCGTGGCCTTGCATTCCTCCACACATCCAACATTGTTCACGGGGATGTCAAGCCACAAAG CGTCCTCTTTGATGCAGATTTCGAAGCCCATCTCTCTGACTTCGGGCTAGACAGATTAACCATTGCAACCCCAGCAGAACCTTCAACCTCAGCAACAGTT GGCACATTGGGTTATGTATCACCAGAAGCTGTTTTGACAGGAGAGGTTTCAAAAGAAGCAGATGTTTACAGCTTTGGCATAGTATTACTTGAGCTACTAA CAGGGAAAAGGCCAGTGATGTTTACACAAGATGAAGATATTGTCAAGTGGGTCAAGAAGCAACTTCAGAAGGGTCAAATAACAGAACTTTTGGAGCCAGG TTTGCTTGAACTTGACCCTGAATCATCAGAATGGGAAGAGTTCTTGTTAGGTGTTAAGGTTGGGTTACTTTGCACCGCACCGGACCCTCTTGATAGACCC ACAATGCCTGATATTGTTTTCATGCTTGAAGGTTGCCGTGTGGGCCCTGATATCCCATCTTCAGCTGATCCAACCTCTCAACCATCCCCTGCTTGA
AA sequence Show only first row Show all	>Potri.007G014700.1 pacid=42766158 polypeptide=Potri.007G014700.1.p locus=Potri.007G014700 ID=Potri.007G014700.1.v4.1 annot-version=v4.1 MNPIKMSPFFFFLLLFTSFLACKSQQNPQTQALTSIKQNLHDPLGALTGWDPTTPLAPCDWRGVFCTNNRVTELRLPRLQLRGQLSDQFASLTSLRKISL RSNFLNGTLPHSLAKCTLLRALFLQYNSFSGNLPPEISNLTNLQVLNIAQNRFSGEIPRSLPVSLKYLDLSSNTFSGSIPSSVSDLAQLQLINLSYNQFS GSIPASFGQLQSLEYLWLDYNILEGTLPSAIANCSSLVHFSANGNRLGGLIPAAIGELPKLQVVSLSENKFVGAVPTSMFCNVSVYPPSLRIVQLGFNGF SGVVGPESGGCFSVLQVLDLQENHIRGVFPLWLTRVVTLTMLDVSRNLFSGVVPAEIGNLSRLEELKMGGNGFREVVPVEIQQCRSLQVLDLHGNDLSGE IPEVLGDLRGLKVLSLGENQFSGSVPGSFRNLTGLETLNLGGNGLNGSLPDEVMGLSNLTTLDLSGNGFSGEIPATIGNLNRVMLLNLSGNGFSGRIPSS FGNLLRLSSLDLSRQSLSGELPSELAGLPNLQVIALQENMLSGDVHEGFSSLLGLRYLNLSSNGFSGQIPLTFGFLKSLVVLSLSKNHISGLIPPELGNC SDLETLELESNSLTGNIPGDLSRLLHLKVLDLGRNNLSGEIPNEISKCSSLSSLSLDSNHLSGSIPDSLSNLSNLTSLDLSTNNLSGQIPVNLAQISGLV YLNVSRNNLEGGIPTLLGSRFNNPSAFADNPRLCGKPLPRNCVDVEASNRRKRLILLIVVVVSGACMLALCCCFYTYSLLRWRKRLKQGAAGEKKRSPAR PSSNGSGGRGSTDNGGPKLVMFNNKITLAETTEATRQFDEENVLSRTRYGLVFKACYSDGMVLSIRRLPDGSLDENMFRKEAEFLSKVKHRNLTVLRGYY AGAPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHTSNIVHGDVKPQSVLFDADFEAHLSDFGLDRLTIATPAEPSTSATV GTLGYVSPEAVLTGEVSKEADVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQKGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRP TMPDIVFMLEGCRVGPDIPSSADPTSQPSPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36180			Leucine-rich receptor-like pro...		Potri.007G014700 [exp]	0	1
AT3G14172			unknown protein		Potri.001G164900 [exp]	4.79	0.8103
AT1G70750			Protein of unknown function, D...		Potri.010G109900 [exp]	8.30	0.7483
AT5G58530			Glutaredoxin family protein (....		Potri.001G280400 [exp]	20.54	0.7489
AT1G14630			unknown protein		Potri.010G100700 [exp]	38.32	0.6331
AT4G10840			Tetratricopeptide repeat (TPR)...		Potri.002G173400 [exp]	44.72	0.7121
AT3G15470			Transducin/WD40 repeat-like su...		Potri.001G403400 [exp]	88.53	0.6558
AT1G57560	MYB	ATMYB50	myb domain protein 50 (.1)		Potri.010G004300 [exp]	92.46	0.6499
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.004G062400 [exp]	94.04	0.6260
AT4G12740			HhH-GPD base excision DNA repa...		Potri.014G198000 [exp]	99.39	0.5993
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Potri.010G221700 [exp]	106.13	0.6292

Compare expression of checked genes

Potri.007G014700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.