Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38960 198 / 4e-65 CO B-box type zinc finger family protein (.1.2.3) AT2G21320 189 / 1e-61 CO B-box zinc finger family protein (.1) AT1G06040 76 / 2e-17 CO BBX24, STO SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) AT1G78600 76 / 2e-16 CO BBX22, DBB3, STH3, LZF1 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) AT1G75540 70 / 2e-14 CO LHUS, AtBBX21, STH2 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) AT4G39070 67 / 1e-13 CO B-box zinc finger family protein (.1) AT2G24790 67 / 3e-13 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT5G24930 65 / 2e-12 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT5G15850 64 / 3e-12 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT2G31380 63 / 5e-12 CO STH salt tolerance homologue (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117100 [exp] 296 / 5e-104 AT2G21320 192 / 4e-63 B-box zinc finger family protein (.1) Potri.004G162600 [exp] 243 / 9e-83 AT4G38960 248 / 1e-84 B-box type zinc finger family protein (.1.2.3) Potri.009G124400 [exp] 242 / 2e-82 AT4G38960 251 / 8e-86 B-box type zinc finger family protein (.1.2.3) Potri.001G384000 [exp] 74 / 9e-16 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.011G105400 [exp] 72 / 2e-15 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.004G161000 [exp] 71 / 3e-15 AT4G39070 192 / 6e-62 B-box zinc finger family protein (.1) Potri.002G028200 [exp] 71 / 9e-15 AT1G75540 252 / 2e-82 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.005G234500 [exp] 71 / 1e-14 AT1G75540 185 / 2e-56 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.018G013800 [exp] 69 / 8e-14 AT5G24930 348 / 2e-118 CONSTANS-like 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031087 [exp] 212 / 2e-70 AT4G38960 229 / 5e-77 B-box type zinc finger family protein (.1.2.3) Lus10035472 [exp] 210 / 1e-69 AT4G38960 229 / 4e-77 B-box type zinc finger family protein (.1.2.3) Lus10018076 [exp] 184 / 9e-60 AT4G38960 215 / 6e-72 B-box type zinc finger family protein (.1.2.3) Lus10042069 [exp] 83 / 2e-20 AT4G38960 112 / 5e-32 B-box type zinc finger family protein (.1.2.3) Lus10038147 [exp] 74 / 5e-16 AT1G78600 281 / 2e-94 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10042498 [exp] 74 / 1e-15 AT1G78600 274 / 1e-91 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10028791 [exp] 72 / 1e-15 AT1G75540 206 / 9e-66 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10017495 [exp] 71 / 7e-15 AT1G75540 202 / 2e-64 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10020105 [exp] 64 / 4e-12 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10026909 [exp] 64 / 5e-12 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [poplar] [flax] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Potri.007G015200.2 pacid=42764979 polypeptide=Potri.007G015200.2.p locus=Potri.007G015200 ID=Potri.007G015200.2.v4.1 annot-version=v4.1 ATGCGTACCCTTTGCGACGCCTGTGAGAGTGCTGCTGCTATTGTCTTCTGTGCTGCTGATGAGGCTGCACTTTGCCTTGCCTGCGATGAGAAGGTTCATA TGTGCAACAAACTTGCTAGCAGGCATGTGCGAGTGGGTCTGGCAAATCCCAGTGACGTTCCACGCTGTGACATATGTGAAAATGCACCTGCTTTCTTTTA TTGTGAGACAGATGGAAGTTCCCTTTGCTTGCAATGTGATATGACTGTTCATGTTGGAGGTAAAAGGACACATGGGAGATATCTTTTGTTGAGACAAAGA GTTGAGTTTCCAGGGGATAAACCTCAGCCTGATGACCTACATTCGCAACCTATGCATCCAGGGGAGACAAGGAAAGGACAGAATCAGCCACCAAAGGCAA CAGCAGAAGAGAAGCGACAGAATCGCCAGGTTTCTCCAGCTCCAATGTCACTCTCTAATTCTGATGGACATGACAAAGTGGATAAAAAGATGATTGATTT GAATATGAAGCCTCAACGAACTGATCACGAACAAGCTTCTAATAATCAGGAACTGTGA
AA sequence Show only first row Show all	>Potri.007G015200.2 pacid=42764979 polypeptide=Potri.007G015200.2.p locus=Potri.007G015200 ID=Potri.007G015200.2.v4.1 annot-version=v4.1 MRTLCDACESAAAIVFCAADEAALCLACDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCETDGSSLCLQCDMTVHVGGKRTHGRYLLLRQR VEFPGDKPQPDDLHSQPMHPGETRKGQNQPPKATAEEKRQNRQVSPAPMSLSNSDGHDKVDKKMIDLNMKPQRTDHEQASNNQEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38960	CO		B-box type zinc finger family ...		Potri.007G015200 [exp]	0	1
AT1G66330			senescence-associated family p...		Potri.017G129100 [exp]	2.44	0.7985
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.004G121800 [exp]	3.16	0.8292
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.010G167600 [exp]	9.89	0.8233
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Potri.002G180800 [exp]	10.77	0.7946
AT5G19430			RING/U-box superfamily protein...		Potri.001G275900 [exp]	11.40	0.7634
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.005G232700 [exp]	16.79	0.7807
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Potri.014G106800 [exp]	23.23	0.7235
AT3G02470		SAMDC	S-adenosylmethionine decarboxy...		Potri.004G106800 [exp]	24.00	0.7417	Pt-SAMDC.3
AT5G06980			unknown protein		Potri.001G031800 [exp]	24.26	0.7481
AT5G54470	CO		B-box type zinc finger family ...		Potri.001G414700 [exp]	25.61	0.7565

Compare expression of checked genes

Potri.007G015200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.