Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36195 701 / 0 Serine carboxypeptidase S28 family protein (.1.2.3) AT4G36190 679 / 0 Serine carboxypeptidase S28 family protein (.1) AT2G18080 644 / 0 EDA2 embryo sac development arrest 2, Serine carboxypeptidase S28 family protein (.1) AT2G24280 144 / 2e-37 alpha/beta-Hydrolases superfamily protein (.1) AT5G65760 125 / 6e-31 Serine carboxypeptidase S28 family protein (.1) AT5G22860 86 / 6e-18 Serine carboxypeptidase S28 family protein (.1.2) AT3G28680 42 / 0.0002 Serine carboxypeptidase S28 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G015400 [exp] 848 / 0 AT4G36195 704 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Potri.010G232300 [exp] 147 / 1e-38 AT5G22860 528 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G212900 [exp] 145 / 5e-38 AT5G22860 481 / 6e-167 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213300 [exp] 134 / 3e-34 AT5G22860 588 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213500 [exp] 134 / 4e-34 AT5G22860 593 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.018G018500 [exp] 129 / 3e-32 AT5G22860 522 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002300 [exp] 127 / 8e-32 AT5G22860 449 / 1e-154 Serine carboxypeptidase S28 family protein (.1.2) Potri.007G008100 [exp] 127 / 2e-31 AT5G65760 783 / 0.0 Serine carboxypeptidase S28 family protein (.1) Potri.018G111000 [exp] 125 / 4e-31 AT2G24280 728 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028365 [exp] 673 / 0 AT4G36195 655 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Lus10041817 [exp] 325 / 2e-108 AT4G36190 325 / 1e-108 Serine carboxypeptidase S28 family protein (.1) Lus10005354 [exp] 128 / 5e-32 AT5G22860 557 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10021400 [exp] 126 / 3e-31 AT5G22860 558 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10011603 [exp] 125 / 8e-31 AT5G65760 753 / 0.0 Serine carboxypeptidase S28 family protein (.1) Lus10008358 [exp] 118 / 3e-28 AT5G22860 486 / 1e-168 Serine carboxypeptidase S28 family protein (.1.2) Lus10021325 [exp] 112 / 4e-26 AT2G24280 515 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10017002 [exp] 108 / 1e-25 AT2G24280 447 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10005353 [exp] 103 / 1e-23 AT5G22860 476 / 3e-165 Serine carboxypeptidase S28 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF05577 [poplar] [flax] Peptidase_S28 Serine carboxypeptidase S28
Representative CDS sequence Show only first row Show all	>Potri.007G015300.1 pacid=42766370 polypeptide=Potri.007G015300.1.p locus=Potri.007G015300 ID=Potri.007G015300.1.v4.1 annot-version=v4.1 ATGACGACGATGAAGCTAGTGTTTATTTCTTTGCTGCTCTTGTCAACAGCACCTTATGCCTCTCTCGCTCTTAGAACGCAGGTTCACAGCTTGTCTGAAA GCAGCAACAGCAAGAATTACTTGACCACTCAAGAACTCTGGTTCAATCAGACCCTTGATCACTTTTCTCCATTCGACCATCATAAGTTTCCGCAAAGATA CTACGAGTTTCTTGACTACTTCAGGATTTCTGATGGTCCCATATTTTTGGAAATTTGTGGGGAGTCTTCTTGTAACGGGATAGTCAATGACTACATCAGT GTTTTGGCAAAGAAGTTTGGAGCAGCTGTGGTTTCACTTGAGCATCGTTACTATGGGAGAAGTTTGCCTTTTAAATCAACAACAACAGAGAATTTGAGAT TTCTTTCGTCTAAACAGGCGCTATTCGACTTGGCTGTTTTCCGTCAGTATTATCAGGAATCATTAAACCTGAAGCTCAATAGAACAAGTGTTGAAAATCC TTGGTTTGTTTTTGGTGGTTCATATGCTGGAGCACTCAGTGCATGGTTTCGTCTTAAGTTTCCACATTTAACATGCGGGAGTCTTGCAAGTTCTGCAGTT GTTCTTGCTATTCACAACTTCACCGAATTTGATCAGCAGATTGGTGAGTCAGCTGGTGCTGAATGTAAAGCTACACTGCAAGAAACTACTCAACTTGTCG AAGAAAGGCTTGCGTCAAATAAACAAGCAGTGAAGGCATTGTTTGATGCAGCTGAGCTGGAGATTGATGGTGACTTCCTGTATTTTCTGGCAGATGCAGC TGTTATAGCATTTCAATACGGGAATCCGGATATAGTATGCTCCACTCTTGTTAAAGCAAAGAACAATGGAGATGATTTGGTGGAGGCATATGCAAAATAT GTTAAAGAGTATTATCTTGGAACTTTTGGCTCCAGCGTTCAGACATATAATCAGAAGTATTTGAAAGACACTTCTCTTAATAAACATACTGGTGATCGAT TGTGGTGGTTCCAAGTTTGCACTGAAGTAGCATATTTTCAAGTGGCACCCTCAAATGATAGTATTCGCTCTTCAAAAGTCGACGCAAGATACCATTTGGA CCTTTGCAAGAACGTCTTTGGAGAGGGTATCTATCCTGAAGTTGATGTAACGAATATATATTATGGAGGCACCAATATTTCAGGTTCAAAAATTGTTTTT GCAAATGGGTCTCAAGATCCCTGGCGCCATGCGTCGAAACAGACCTCGTCCCCGGATATGCCTTCCTTTTTAATCTCTTGTCACAACTGTGGTCATTGTA CTGATATAAGAGGTTGTCCACAGACTCCTTTGAGCCTTGAAGGTAATGCTCGGAACTGCAGCTCCCCTGAAGCAGTTGAAAAGGTTAGGCATCAGATCAT AGAAAAGATGGACTTGTGGCTCTCTGAGTGTCGTGCTGGTAGTTGGAGCTCCATGTGA
AA sequence Show only first row Show all	>Potri.007G015300.1 pacid=42766370 polypeptide=Potri.007G015300.1.p locus=Potri.007G015300 ID=Potri.007G015300.1.v4.1 annot-version=v4.1 MTTMKLVFISLLLLSTAPYASLALRTQVHSLSESSNSKNYLTTQELWFNQTLDHFSPFDHHKFPQRYYEFLDYFRISDGPIFLEICGESSCNGIVNDYIS VLAKKFGAAVVSLEHRYYGRSLPFKSTTTENLRFLSSKQALFDLAVFRQYYQESLNLKLNRTSVENPWFVFGGSYAGALSAWFRLKFPHLTCGSLASSAV VLAIHNFTEFDQQIGESAGAECKATLQETTQLVEERLASNKQAVKALFDAAELEIDGDFLYFLADAAVIAFQYGNPDIVCSTLVKAKNNGDDLVEAYAKY VKEYYLGTFGSSVQTYNQKYLKDTSLNKHTGDRLWWFQVCTEVAYFQVAPSNDSIRSSKVDARYHLDLCKNVFGEGIYPEVDVTNIYYGGTNISGSKIVF ANGSQDPWRHASKQTSSPDMPSFLISCHNCGHCTDIRGCPQTPLSLEGNARNCSSPEAVEKVRHQIIEKMDLWLSECRAGSWSSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36195			Serine carboxypeptidase S28 fa...		Potri.007G015300 [exp]	0	1
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Potri.014G146600 [exp]	1.41	0.7710
AT4G33625			unknown protein		Potri.017G043200 [exp]	3.16	0.7201
AT4G19180			GDA1/CD39 nucleoside phosphata...		Potri.015G079900 [exp]	3.16	0.7581
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Potri.005G044400 [exp]	5.65	0.7218	CUZN-SOD.1
AT4G25780			CAP (Cysteine-rich secretory p...		Potri.018G096028 [exp]	5.91	0.6826
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.003G009000 [exp]	6.48	0.7499
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.014G106000 [exp]	11.22	0.5996
AT2G44060			Late embryogenesis abundant pr...		Potri.007G146300 [exp]	14.00	0.6625
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Potri.008G092300 [exp]	15.19	0.6745
AT5G65470			O-fucosyltransferase family pr...		Potri.007G011000 [exp]	16.43	0.6882

Compare expression of checked genes

Potri.007G015300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.