Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36195 705 / 0 Serine carboxypeptidase S28 family protein (.1.2.3) AT4G36190 689 / 0 Serine carboxypeptidase S28 family protein (.1) AT2G18080 660 / 0 EDA2 embryo sac development arrest 2, Serine carboxypeptidase S28 family protein (.1) AT2G24280 136 / 8e-35 alpha/beta-Hydrolases superfamily protein (.1) AT5G65760 108 / 5e-25 Serine carboxypeptidase S28 family protein (.1) AT5G22860 84 / 4e-17 Serine carboxypeptidase S28 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G015300 [exp] 816 / 0 AT4G36195 701 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Potri.010G232300 [exp] 140 / 3e-36 AT5G22860 528 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.006G207900 [exp] 126 / 4e-31 AT2G24280 563 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G212900 [exp] 124 / 1e-30 AT5G22860 481 / 6e-167 Serine carboxypeptidase S28 family protein (.1.2) Potri.007G008100 [exp] 120 / 3e-29 AT5G65760 783 / 0.0 Serine carboxypeptidase S28 family protein (.1) Potri.018G111000 [exp] 120 / 3e-29 AT2G24280 728 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G018500 [exp] 117 / 5e-28 AT5G22860 522 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002200 [exp] 115 / 2e-27 AT5G22860 534 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213300 [exp] 114 / 3e-27 AT5G22860 588 / 0.0 Serine carboxypeptidase S28 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028365 [exp] 694 / 0 AT4G36195 655 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Lus10041817 [exp] 331 / 1e-110 AT4G36190 325 / 1e-108 Serine carboxypeptidase S28 family protein (.1) Lus10005354 [exp] 124 / 2e-30 AT5G22860 557 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10021400 [exp] 123 / 5e-30 AT5G22860 558 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10011603 [exp] 119 / 1e-28 AT5G65760 753 / 0.0 Serine carboxypeptidase S28 family protein (.1) Lus10021325 [exp] 115 / 3e-27 AT2G24280 515 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10008358 [exp] 111 / 6e-26 AT5G22860 486 / 1e-168 Serine carboxypeptidase S28 family protein (.1.2) Lus10017002 [exp] 101 / 5e-23 AT2G24280 447 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10005353 [exp] 98 / 1e-21 AT5G22860 476 / 3e-165 Serine carboxypeptidase S28 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF05577 [poplar] [flax] Peptidase_S28 Serine carboxypeptidase S28
Representative CDS sequence Show only first row Show all	>Potri.007G015400.1 pacid=42765897 polypeptide=Potri.007G015400.1.p locus=Potri.007G015400 ID=Potri.007G015400.1.v4.1 annot-version=v4.1 ATGGAAATGATGAAACTGGCTTTGATGTCCACGTTTCTCTTTTTCCTGCTTTTCTCAACAGCATCTCATGCCTATCTCGCACCTCGTACGTTGCTTTACA GCTTCTCTAAAAGCAGCACCAACAGCAACCGCTCCTTGACCACTAAAGAACTCTGGTTTAATCAGACGCTTGATCACTACTCTCCATTTGATCACCATAA GTTTCAACAACGGTATTATGAGTTTCTTGACTACTTCAGAGTGCCTGATGGACCCATCTTTTTGAAAATTTGTGGGGAATCTTCATGCGATGGGATAGCC AATGACTATATCGGCGTTTTGGCGAAGAAGTTTGGAGCAGCTGTGGTCTCACTTGAGCATCGTTACTATGGAAAAAGTTCACCCTTCAAATCAACAACAA CAGAGAATTTGAGATATCTTTCATCTAAACAGGCACTCTTTGACTTGGCTGTTTTTCGTCAGTATTATCAGGAATCCCTAAACCTGAAGCTCAATAGAAC AGGCGTTGAAAATCCTTGGTTTGTTTTTGGTGTTTCATACTCTGGAGCTCTTAGTGCATGGTTTCGTCTTAAGTTTCCACATTTAACATGTGGGAGTCTT GCAAGTTCTGCTGTTGTTCTTGCTGTTTATAACTACACTGAATTTGATCAGCAGATTGGTGAGTCTGCCGGGGCTGAATGTAAAGCTGCACTACAAGAAA CTACTCAACTTGTAGAAGAAAGGCTTGCATCTAATAAAAAAGCAGTGAAGACCTTGTTTGATGCAGCTGAGCTTGAGATTGATGGTGACTTCCTGTATTT TCTGGCAGATGCAGCTGCTACAGCGTTTCAATACGGAAATCCGGATAAACTATGTCCCCCACTTGTTCAAGCAAAGAAGGATGGAGAAGATCTGGTGGAG GCATATGCAAAATATGTTAAAGAAGATTACGTTGGAAGTTTTGGTGTCAGCGTTCAAACATATGATCAAAGGCATTTGAAAGACACTACTCTTAATGAGA ATTCTGGTGATCGGTTGTGGTGGTTCCAAGTATGTACAGAAGTAGCATATTTTCAAGTTGCACCTGCAAATGATAGTATTCGCTCCTCACAAGTTGACAC AAGATATCATTTAGATCTTTGTAAGAAGGTCTTTGGAGAAGGCATCTATCCTGAGGTTGACAAAACTAATATATATTATGGGGGCACAAATATGGCAGGT TCAAAGATCGTTTTTACAAATGGGTCTCAAGATCCCTGGCGCCATGCATCAAAGCAGATTTCATCTCCAGATATGCCCTCCTTTGTGATGTCTTGTCATA ATTGTGGTCATGGAACTGATATGCGAGGATGTCCACAATCTCCCTTCAACATTGAAGGTAATGCTCGGAATTGTGGTTCCCCTGATGCAGTTGAAAAAGT AAGGCATCAGATCATAGAAAAGATGGACTTGTGGCTCTCTGAGTGCCATGCTAGCGGTAGGAGTTCCATGTGA
AA sequence Show only first row Show all	>Potri.007G015400.1 pacid=42765897 polypeptide=Potri.007G015400.1.p locus=Potri.007G015400 ID=Potri.007G015400.1.v4.1 annot-version=v4.1 MEMMKLALMSTFLFFLLFSTASHAYLAPRTLLYSFSKSSTNSNRSLTTKELWFNQTLDHYSPFDHHKFQQRYYEFLDYFRVPDGPIFLKICGESSCDGIA NDYIGVLAKKFGAAVVSLEHRYYGKSSPFKSTTTENLRYLSSKQALFDLAVFRQYYQESLNLKLNRTGVENPWFVFGVSYSGALSAWFRLKFPHLTCGSL ASSAVVLAVYNYTEFDQQIGESAGAECKAALQETTQLVEERLASNKKAVKTLFDAAELEIDGDFLYFLADAAATAFQYGNPDKLCPPLVQAKKDGEDLVE AYAKYVKEDYVGSFGVSVQTYDQRHLKDTTLNENSGDRLWWFQVCTEVAYFQVAPANDSIRSSQVDTRYHLDLCKKVFGEGIYPEVDKTNIYYGGTNMAG SKIVFTNGSQDPWRHASKQISSPDMPSFVMSCHNCGHGTDMRGCPQSPFNIEGNARNCGSPDAVEKVRHQIIEKMDLWLSECHASGRSSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36195			Serine carboxypeptidase S28 fa...		Potri.007G015400 [exp]	0	1
AT5G65470			O-fucosyltransferase family pr...		Potri.007G011000 [exp]	10.90	0.7361
AT4G00585			unknown protein		Potri.014G079800 [exp]	15.19	0.6575
AT5G06470			Glutaredoxin family protein (....		Potri.016G067700 [exp]	15.62	0.7483
AT1G73177		APC13, BNS	anaphase-promoting complex 13,...		Potri.004G058400 [exp]	16.30	0.7659
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G125200 [exp]	21.63	0.6859
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.002G120400 [exp]	32.40	0.6723
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Potri.002G190500 [exp]	34.29	0.6991	Pt-MSK.2
AT4G01140			Protein of unknown function (D...		Potri.014G094000 [exp]	34.30	0.7168
AT1G27190			Leucine-rich repeat protein ki...		Potri.004G081700 [exp]	41.49	0.6794
AT5G41050			Pollen Ole e 1 allergen and ex...		Potri.001G326200 [exp]	42.98	0.7141

Compare expression of checked genes

Potri.007G015400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.