Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16485 711 / 0 nucleic acid binding;zinc ion binding;DNA binding (.1) AT3G51120 649 / 0 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) AT2G18090 399 / 2e-120 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (.1) AT5G63700 218 / 4e-60 zinc ion binding;DNA binding (.1) AT5G08430 201 / 1e-54 SWIB/MDM2 domain;Plus-3;GYF (.1) AT5G23480 96 / 5e-20 SWIB/MDM2 domain;Plus-3;GYF (.1) AT4G34290 55 / 2e-08 SWIB/MDM2 domain superfamily protein (.1) AT2G14880 53 / 1e-07 SWIB/MDM2 domain superfamily protein (.1) AT3G03590 49 / 2e-06 SWIB/MDM2 domain superfamily protein (.1) AT2G35605 47 / 5e-06 SWIB/MDM2 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117300 [exp] 2493 / 0 AT2G16485 695 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.004G161700 [exp] 799 / 0 AT2G16485 1050 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.009G123800 [exp] 788 / 0 AT2G16485 1064 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.001G305900 [exp] 245 / 1e-69 AT5G63700 406 / 2e-135 zinc ion binding;DNA binding (.1) Potri.004G133600 [exp] 194 / 7e-52 AT5G08430 405 / 3e-135 SWIB/MDM2 domain;Plus-3;GYF (.1) Potri.011G078050 [exp] 158 / 5e-39 AT5G63700 368 / 3e-116 zinc ion binding;DNA binding (.1) Potri.005G134500 [exp] 50 / 6e-06 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.001G297400 [exp] 47 / 1e-05 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) Potri.009G092200 [exp] 46 / 3e-05 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014271 [exp] 801 / 0 AT3G51120 644 / 0.0 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10042072 [exp] 709 / 0 AT2G16485 1007 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10018078 [exp] 697 / 0 AT2G16485 986 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10025973 [exp] 592 / 0 AT3G51120 487 / 2e-148 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10014272 [exp] 492 / 3e-150 AT3G51120 391 / 7e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10025974 [exp] 491 / 1e-148 AT3G51120 395 / 3e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10020897 [exp] 99 / 6e-21 AT5G08430 228 / 4e-68 SWIB/MDM2 domain;Plus-3;GYF (.1) Lus10009333 [exp] 49 / 2e-05 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10002106 [exp] 45 / 2e-05 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1) Lus10019640 [exp] 49 / 3e-05 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0673 [poplar] [flax] GYF PF02213 [poplar] [flax] GYF GYF domain
Representative CDS sequence Show only first row Show all	>Potri.007G016000.2 pacid=42765255 polypeptide=Potri.007G015950.1.p locus=Potri.007G016000 ID=Potri.007G016000.2.v4.1 annot-version=v4.1 ATGCGCCAGCGGCAAGAAGACTATAGACCTTCTATTCCAGATGCGACCAAAGAAGAAGCGCCGCTAACTTTTGACAATTCGGTACCAACTTCTGATCCTA TGAGCACCGATCAATGCCAAACGATTCCAGAAATGGAGGATTCTCAGCTCGTTGGAGCTACAGTCTCGATGGTTACTGCTGACGTGGACTCGTCTAAGAG AGAATCAGTACATATCGTGCCTGCTGTAGAGGTTAGTAATCATGTCAGAATTGCCGAAAACAGTACGGGAAAGCGAAAGCGAGGCCGCCCGCCTAGAACT CAAGGGAAATTAGGGCCGCCACAAGCTCCTCCTGCTTCGTCTTCACAGAGGAAGAAGAGAGATGAAGAAGATGTTTGTTTTATTTGTTTTGATGGTGGTA GTCTTGTTCTCTGTGATCGTCGGGGTTGTCCGAAGGCATACCATCCGGCTTGTATCAAAAGGGACGAGGCATTCTTTCGATCAAAGGCTAAATGGAATTG CGGGTGGCATATCTGTAGCAGTTGTCAGAGGGCTTCTCATTATATGTGCTACACATGTCCATACTCTTTGTGCAAAGGTTGCACAAAAGATGCTGATTAT TTGTGTGTAAGAGGGAATAAAGGATTTTGTGGTACATGCATGAGAACTATAATGCTGATTGAAAATATTGCAACAGTGAATCAGGAGAAGGTTCAAGTGG ATTTTGATGACACAACTAGCTGGGAGTATCTCTTCAAGGTCTACTGGATTTACTTGAAAGCAAAGCTATCTTTAACAATAGACGAGCTAACTAAAGCTAA AAATCCTTGGAAAGGAGATGACCTAACCAAAGTTAAAAGTCCTTGGAAAGGAGCTGGTGCGATGGCTCCTAAGCAGGAGCCTTCAGGTGAATTTTGTCAT AGCAATGATAATAATGGCTCCTTTTCAGACAGCTTCTGTGGAAACCTGGAAATACATGCTAAGAGAAGAAAAATGGAGGACCAACCAAAATTGCACATCG AGGAGAACTCTGTTGTTATGGAAAAATCACGCATTGACCAACTTACGCATCTGCCTGACAGCACATTGTGGGCAACAAAGGAGCTCTTGGATTTTGTTTC ACACATGAAAAATGGGGATATGTCTGTGCTATCACAGTTTGATGTTCAGAGTCTTCTGCTAGAATACATAAAAAGAAACGATCTTCGTGATCCTCACCAG AAAAGTCATATTTTTTGTGATTCAAGGCTTATAAAGCTCTTTGGAAAAGAACGTGTGGGTCATTTTGAAATGCTGAAGCTTCTTGAATATCACTTTCTTG TAAAAGAAAAATCTCCAGTGGATGAAACCACTGCTGGTGGTGGCCAGGTTGAGGTGGCTGGAAATAGTGACAGTCAGTTGGGGACAGGTAGTGATCGAAG GCGTAAAACACGTAAAAAAATAGATGAGAGAGGACCACAGATTAATTGTAATCCAGAGGAATATGCAGCAATTGATGTTCACAATATTAGTTTGCTCTAC TTAAAGCGTAGTTTGATGGAGAACTTAATGGATGATGCTGGAAAGTTTCATGAAAAGGTTGTTGGCTCATTTGTGCGAATCAGGATTTCTGGTGGTGATC AAAAACAAGATATGTATAGGCTTGTCCAAGTTGTAGGTATTGGCAAGGCCGCTGAATCATATAAAGTTGGCACAAAAACAACTGATGACATGCTTGAAAT ATTAAATTTAGATAAGAAGGAGGTCATATCAATTGATGGGATTTCAAACCAGGACTTCTCAGAGGGTGAATGCAAACGTTTGCGTCAGAGTATAAAATGT GGGCTTATCAAACGGTTAACGGTGGGTGAGATACAGAAGAGAGCAATGGCGATCCAGGATGCCAAAGTTAGGGATCGTTTGGAAGAAGATATATTAAGGC TTAATCATCTTCGTGACCGAGCAAGTGAAAAAGGACTTAGGAAAGAGCTTAGAGAATGTGTGGAGAAATTAGAGCTTCTCAAGTCACCTGAAGAACGTCA GCGCAGGCTGCTTGAGATTCCCGATGTACATGCTGATCCAAATATGAATCCAAGTTATGATTCTGAAGAAGATTCTGGAGAATCACACAAGAAGAAACAA GGTGACCATGCAAGACCAAGAAATTCTAGCGCTGCTAGAAATGGGGCAGCACTCAACTCTTCAATGGGAGGAGGGGATGTCTTGAGTGATAGAGGAAACA TGGGACAGAATTTAGCTACTGCTTCTGAGCAGGGTAGAGATACGTGCACAACATCATATGTGGATAGAGATGGTACTAATATGGTTCATGAGAGAGCGAG CGAGTCAATGCAGACTCAGGGAGGAGAACAAACTGGGCTAAATAGTCAGAATGCACCAAAGAACTGGGTAGCTTCTACCGGTTCAATGACTGATGATTGG AAAAGTCAATCAATTGTACAATGTGGATCGTATTCCGGGGTTGTATCACTGAATTTACCACCACCACTTTCTATAGGAAGAGAGCAATTGGTTGATGATA TGGAGATGGACAAACTGTGGCACTATCAGGATCCAACTGGAAAAACTCAAGGGCCATTTGCTATGGCCCAACTGCGTAAATGGAGTACAAGTGGGCTTTT CCCTCAAGATTTGAGAGTGTGGAAGATAAATGAGAAGCCTGATGACTCTATTCTTTTGACGGATGCATTGGTTGGGCGATTCCATAAAGGGCCAGCATTG CCTGACAACAGCTACTTGCTGGCTCAAGAAGCAATAGTTGCTTCTGATAAAGATAAAAGGCATGAATTTGATTTGCATCAAAGTGCTGATGCCTCTCTGG TAGACAAGAAAAATATGGATCACTGGAAGTCGGTGCAAAACAATGCAAGTGTCAATTGCAATGATAATGATGCACTTCTAAAAAGCAATGCACTGGGCAC CCATTCTTCAAGTTGGACTACAGGTGCGGATGCCATCATTCCTAACAATGGATCGGCTCAACTTGCTCTACAACTCTTGGAATTGTCCAAGGGCTGCAAG TCTTGGTCTGATCAATCCCAGATGTGCAGTTCACTTTCCTCACTTCCATCTTCTGGAAAGATTGGTGAAATTCCACTACCTCAGGCAAAGGAAGAACATG AAGATGAAAAACGGAGTCATGATCTGAGTTATGTAAATGGGAATGCACTCAAGACACCTGAAGGTAAAAATAACATTGGCAAAAGTGAGGATAAACAGGC TGATAGTGAGAGTTATTCAAACCAATCTTCTGGACAGAACTGGAGACCACCCATTAAAAGTTCAAGCGGATGGGATTCCAAGCCGGCTTTTGTTTCTGGG GATAAGTCTGTTGAAACATCTCAGAAGAATGAGGAAATTGATTTCTTTGATTTGCCCAGTCCAACACCAAAGCAGCACCTCAAGGACTTGAAAGGTCATA CTGCTGAAAACAATCACTCCATTTCTTCGAAGCTTCCTGTTCTGGATTCAGGATGTAGCTGGAGTACTGCTTCCAGTTTAGTGGTTGGTGGAGCAACGCT AGCTCGAGTAGCTGGTGAATGGGGTGGCTATTCCCCTGCTCCTGTCAAACCTGTTGAGGAATGGGACTCCAATCATGTGTCTGCCTCTTCACTGAAACCT ACAGATGGGGGCAGTGATCATGCTTCTACACAGACTCCAGATAGTGGCCCACTGGCACACTCTCCCTCCACTCACCCAGTGATTGATGCATCTGATTGGC AACGCATCATTCCTGAACCTACTGAGTTCTGCTCTTTAGTTGATGAATCTGTTTCAGATCTGTTGGCAGAAGTTGAAGCGATGGAGTCTCTTGGTGGTTT GCCTTCTCCTACTTCAAAACTGCGGTCTGCTGAGGAATTGACACGAGGTTATGATGATGATTGCTTCAGTCCTGTTGATGGGTTTAGCCCAGCACCTGAT CCAGGCAAAAGTGATGCATTCAGTTCGACTGCTGATATACAAATACCTTCTCACTTGACTGTAGCGAGCGAAGCACTGCTGTCATGTCACATGCCTTCTG AGCCCACTGTCATAGATAAACCACTTGCTGTATCTCCAATGCCTTCTCAGTTGACTGCAGTCAATGAATCACTTAGGATATCTTGCACGCCTTCTCAGTC CACTATCACAGACGAACCACTAGAGAGATCCCAAAAGCCTTCTCAGTCGACTTTGATAGATGAGCCACTTGGTTTATCGCAGATTGATGTTCCAAACCCT CAAAAGAGCTTCAGTGAACATTCTTCCACAAGTCCTGAAGTGGAAGGTAATACTAAGCCCAATGATGTTCCAGTTAACGAATGGGAAAAAGGTTCAGAAA TACAGCCTCTTGTGTCATTAGCTGGTAACCAGGGAGAATCAGGTGCAGACATCCAATCCACAACTCCATCCACGGCCAGTCAATTGGAAGCAGGTTCAGA TGTTCAACAACCCACACCATCCCACGGAGATGCTGGTCAGGGAACCATAAATGAAAGAGAAGCACAAGGAAACACGAACATGGTTTGGGGAAACGGTCAT GGCGGCACAGGTCAGCAACATGCTAGGACGAATGGAGCCAATTCTGCAGGGAACCCAGGCAGTTGGGGAAGCCAACCAAGGTATGGCGGGGACAGATTTT CTGGTCCAAGAGACCACCGTAACAATTTTCAAGGCAGAGATAGAGATTCTGGTTTTGGTAGGGATAGGTCATCATGGAACAAGCAGCCGTTACATGGTGG TGGAAATGGAGCTAGTACATATAGACCTCCGCCCAAAGGGCAGCGAGTATGTAAATTTTACGAAAGCGGATACTGCAAGAAGGGGGCATCATGTAGTTAT TGGCACCCATGA
AA sequence Show only first row Show all	>Potri.007G016000.2 pacid=42765255 polypeptide=Potri.007G015950.1.p locus=Potri.007G016000 ID=Potri.007G016000.2.v4.1 annot-version=v4.1 MRQRQEDYRPSIPDATKEEAPLTFDNSVPTSDPMSTDQCQTIPEMEDSQLVGATVSMVTADVDSSKRESVHIVPAVEVSNHVRIAENSTGKRKRGRPPRT QGKLGPPQAPPASSSQRKKRDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSSCQRASHYMCYTCPYSLCKGCTKDADY LCVRGNKGFCGTCMRTIMLIENIATVNQEKVQVDFDDTTSWEYLFKVYWIYLKAKLSLTIDELTKAKNPWKGDDLTKVKSPWKGAGAMAPKQEPSGEFCH SNDNNGSFSDSFCGNLEIHAKRRKMEDQPKLHIEENSVVMEKSRIDQLTHLPDSTLWATKELLDFVSHMKNGDMSVLSQFDVQSLLLEYIKRNDLRDPHQ KSHIFCDSRLIKLFGKERVGHFEMLKLLEYHFLVKEKSPVDETTAGGGQVEVAGNSDSQLGTGSDRRRKTRKKIDERGPQINCNPEEYAAIDVHNISLLY LKRSLMENLMDDAGKFHEKVVGSFVRIRISGGDQKQDMYRLVQVVGIGKAAESYKVGTKTTDDMLEILNLDKKEVISIDGISNQDFSEGECKRLRQSIKC GLIKRLTVGEIQKRAMAIQDAKVRDRLEEDILRLNHLRDRASEKGLRKELRECVEKLELLKSPEERQRRLLEIPDVHADPNMNPSYDSEEDSGESHKKKQ GDHARPRNSSAARNGAALNSSMGGGDVLSDRGNMGQNLATASEQGRDTCTTSYVDRDGTNMVHERASESMQTQGGEQTGLNSQNAPKNWVASTGSMTDDW KSQSIVQCGSYSGVVSLNLPPPLSIGREQLVDDMEMDKLWHYQDPTGKTQGPFAMAQLRKWSTSGLFPQDLRVWKINEKPDDSILLTDALVGRFHKGPAL PDNSYLLAQEAIVASDKDKRHEFDLHQSADASLVDKKNMDHWKSVQNNASVNCNDNDALLKSNALGTHSSSWTTGADAIIPNNGSAQLALQLLELSKGCK SWSDQSQMCSSLSSLPSSGKIGEIPLPQAKEEHEDEKRSHDLSYVNGNALKTPEGKNNIGKSEDKQADSESYSNQSSGQNWRPPIKSSSGWDSKPAFVSG DKSVETSQKNEEIDFFDLPSPTPKQHLKDLKGHTAENNHSISSKLPVLDSGCSWSTASSLVVGGATLARVAGEWGGYSPAPVKPVEEWDSNHVSASSLKP TDGGSDHASTQTPDSGPLAHSPSTHPVIDASDWQRIIPEPTEFCSLVDESVSDLLAEVEAMESLGGLPSPTSKLRSAEELTRGYDDDCFSPVDGFSPAPD PGKSDAFSSTADIQIPSHLTVASEALLSCHMPSEPTVIDKPLAVSPMPSQLTAVNESLRISCTPSQSTITDEPLERSQKPSQSTLIDEPLGLSQIDVPNP QKSFSEHSSTSPEVEGNTKPNDVPVNEWEKGSEIQPLVSLAGNQGESGADIQSTTPSTASQLEAGSDVQQPTPSHGDAGQGTINEREAQGNTNMVWGNGH GGTGQQHARTNGANSAGNPGSWGSQPRYGGDRFSGPRDHRNNFQGRDRDSGFGRDRSSWNKQPLHGGGNGASTYRPPPKGQRVCKFYESGYCKKGASCSY WHP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16485			nucleic acid binding;zinc ion ...		Potri.007G016000 [exp]	0	1
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.011G092700 [exp]	7.74	0.7922	Pt-TOP1.2
AT5G21160			LA RNA-binding protein (.1.2.3...		Potri.001G220100 [exp]	8.06	0.7511
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.005G230500 [exp]	9.32	0.7247
AT5G12400			DNA binding;zinc ion binding;D...		Potri.009G049100 [exp]	12.64	0.7838
AT1G03080			kinase interacting (KIP1-like)...		Potri.002G049600 [exp]	13.67	0.7391
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.010G247500 [exp]	14.07	0.6930	EIN3C,CMEIL2.1
AT2G16485			nucleic acid binding;zinc ion ...		Potri.005G117300 [exp]	14.31	0.7782
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Potri.005G124300 [exp]	21.21	0.7418
AT3G62900			CW-type Zinc Finger (.1)		Potri.014G132900 [exp]	24.37	0.7741
AT3G50370			unknown protein		Potri.007G043300 [exp]	24.67	0.7703

Compare expression of checked genes

Potri.007G016000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.