Plant FIBer expression Database

Potri.007G016100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G36210 656 / 0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3)
AT2G18100 643 / 0 Protein of unknown function (DUF726) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028363
[exp]
677 / 0 AT4G36210 813 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3)
Lus10041814
[exp]
616 / 0 AT4G36210 752 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3)
Lus10024307
[exp]
337 / 2e-106 AT4G36210 608 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3)
Lus10033181
[exp]
334 / 2e-105 AT4G36210 605 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3)
Lus10010626
[exp]
292 / 4e-91 AT4G36210 376 / 2e-125 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3)
Lus10033916
[exp]
228 / 8e-66 AT2G18100 416 / 5e-138 Protein of unknown function (DUF726) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF05277 DUF726 Protein of unknown function (DUF726)
Representative CDS sequence
>Potri.007G016100.2 pacid=42766416 polypeptide=Potri.007G016100.2.p locus=Potri.007G016100 ID=Potri.007G016100.2.v4.1 annot-version=v4.1
ATGTCAACCACAAGCTCAACCACGGCGACGTCGTTTTTATCACGGACGCAGAGATACGCAGCCGGAGCATTATTTGCAATCGCTCTTCACCAAGCACAGA
TCCATCAAACCCGTCCGCTTGGCTTATTCCACGATGATTCGGAACAAGAGGAACGAACCAGTTGCAGCAGTAGTCATAGTAACGGCAGCAGCAGTGATTC
CGTTTCTGAAGACCCTGACCTTTGGATCCACGAAAATTCGGGCCTCCTCCGACCCGTATTCAGGTTTTTAGAGGTTGAGTCAGTAGCATGGACTGGACTT
GAAGAGACAGCTGGTGGTTCTCCTGCTAAGCATCATGTTGGAGCTTTCTTGAGGTTATTATCAGAAGAAAGTGGCGATGCGTCTTCTTCTTCTTCTCAAA
GTTCGGATCAAGAATTTGCTTTGTCAAAGGCTGTTGATGTTATGGAAGAAACCATGGGAGCAAATCCTGTGTCTTCCCAGTCTAAGAAGGAGAAGCATAA
GGAGTATGAGACTCAATGTCGTGAAAAGTTATCTGCTGGCAGTGAGGTGAAATCAACCTCTGAGGTGGAAAATGATTCGCCAAAAACTGCGAAGGATGAT
CATTCTGCTGATGTTAGTGATGCACCTCGAGACTCTGGACATAATGTTGATGAGGAACCCGTTGAAGAGGAGAAGATGCTAAGTAATCAGAGGAAAGTGA
CAGTGCTGTATGAAATTCTTTCAGCTTGTCTGGCTGATAGACGAGAAGAAAATAAAAAATGCACCCGAAAAAGAAATGGCTATGATGCTCGACATCGTGT
GGCTCTGAGATTGCTGGCAACTTGGCTTGATATTAAGTGGACGAAAATGGAAGCCATTGAGTTGATGGTTGCGTGCTCTGCCATGGCTGTAGCAAAAGAG
GAAGCATCCAAGGAAGAAACCAAATCGCCTAAAAGCAAATGGGCTAAATGGAAGCGTGGTGGCATCATTGGTGCGGCTGCAATAACTGGAGGAACCTTAT
TGGCCATTACTGGTGGATTAGCTGCCCCTGCAATTGCTGCAGGATTTGGTGCTCTAGCACCAACATTGGGCACTATTATCCCTGTAATTGGAGCTAGTGG
ATTTGCAGCTGCTGCAAGTGCTGCAGGAACTGTTGCTGGCTCTGTTGCTGTTGCTGCATCATTTGGAGCTGCTGGAGCTGGACTTGCGGGGACCAAGATG
GCTAGGAGAACTGGAAGTGTTGATGAATTTGAATTCAAAGCTGTAGGAGATAACCATAACCAAGGCCGACTAGCAGTTGGGATTATGGTCTCAGGATGCG
TGTTTGACGAGGAAGATTTTATCAAGCCCTGGGAAGGACAAAATGACAACTTGGAGAGGTATGCGCTGCACTGGGAACCTAAGAATCTAATTGCAGTGAG
CACTGCCATTCAGGATTGGCTTACTTCAAGAATTGCAATGGAGTTTATGAGGCAAGGTGCAATGCTGACCGTGTTAAGCACACTTTTGGTAGCATTGGCC
TGGCCAGCAACATTACTTGCCGCTACTGATTTTATAGACAGCAAATGGACAATTGCTATCGACAGGTCTGACAAAGCTGGGAAGCTGTTGGCAGAAGTGT
TACTAAAAGGACTGCAAGGGAACAGGCCTGTAACCCTTGTGGGTTACTCACTTGGTGCACGTGTAATTTTCAAGTGTCTTGAGACTTTGGCCGAGACAGA
GCATAGTGCTGAAGTTGTAGAAAGAGTCGTTCTTCTTGGAGCACCCATCTCTATTAAGGACCAGAAGTGGGAAGCTGCAAGAAAGATGGTGGCTGGAAGA
TTTGTGAATGCTTACTCCACCGGTGACTGGACCCTTGGAGTTGCTTTTCGTGCAAGCCTACTCACTCAAGGATTAGCTGGAATTCAACCAGTAGATGTTC
CAGGGATTGAGAATGTAGACGTAACCGATCTAGTTGACGGCCACTCTTCCTACCTATGGGCAACACAACAGATATTAGAACAGCTTGAACTGGATGCTTA
TTATCATGTTTTCAGGAGCCCTAATCCTCCTGAACACACAGACTGA
AA sequence
>Potri.007G016100.2 pacid=42766416 polypeptide=Potri.007G016100.2.p locus=Potri.007G016100 ID=Potri.007G016100.2.v4.1 annot-version=v4.1
MSTTSSTTATSFLSRTQRYAAGALFAIALHQAQIHQTRPLGLFHDDSEQEERTSCSSSHSNGSSSDSVSEDPDLWIHENSGLLRPVFRFLEVESVAWTGL
EETAGGSPAKHHVGAFLRLLSEESGDASSSSSQSSDQEFALSKAVDVMEETMGANPVSSQSKKEKHKEYETQCREKLSAGSEVKSTSEVENDSPKTAKDD
HSADVSDAPRDSGHNVDEEPVEEEKMLSNQRKVTVLYEILSACLADRREENKKCTRKRNGYDARHRVALRLLATWLDIKWTKMEAIELMVACSAMAVAKE
EASKEETKSPKSKWAKWKRGGIIGAAAITGGTLLAITGGLAAPAIAAGFGALAPTLGTIIPVIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLAGTKM
ARRTGSVDEFEFKAVGDNHNQGRLAVGIMVSGCVFDEEDFIKPWEGQNDNLERYALHWEPKNLIAVSTAIQDWLTSRIAMEFMRQGAMLTVLSTLLVALA
WPATLLAATDFIDSKWTIAIDRSDKAGKLLAEVLLKGLQGNRPVTLVGYSLGARVIFKCLETLAETEHSAEVVERVVLLGAPISIKDQKWEAARKMVAGR
FVNAYSTGDWTLGVAFRASLLTQGLAGIQPVDVPGIENVDVTDLVDGHSSYLWATQQILEQLELDAYYHVFRSPNPPEHTD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G36210 Protein of unknown function (D... Potri.007G016100
[exp]
0 1
AT5G66210 CPK28 calcium-dependent protein kina... Potri.007G057600
[exp]
6.92 0.6260 CPK16,Pt-CPK16.1
AT4G16440 ferredoxin hydrogenases (.1) Potri.006G017000
[exp]
9.16 0.6174
AT1G58060 RNA helicase family protein (.... Potri.004G222900
[exp]
12.28 0.6557
AT1G47720 OSB1 Organellar Single-stranded, Pr... Potri.014G035600
[exp]
14.69 0.5961
AT1G56460 HIT zinc finger ;PAPA-1-like c... Potri.002G195132
[exp]
15.65 0.6189
AT5G06830 unknown protein Potri.006G059500
[exp]
15.90 0.5984
AT1G18070 Translation elongation factor ... Potri.013G093400
[exp]
19.07 0.6283
AT3G46220 unknown protein Potri.001G234300
[exp]
25.27 0.6261
AT1G60900 U2 snRNP auxilliary factor, la... Potri.011G050400
[exp]
35.94 0.5576
AT3G22270 Topoisomerase II-associated pr... Potri.016G020600
[exp]
39.16 0.5390

Potri.007G016100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.