Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16460 311 / 2e-108 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2) AT3G51090 294 / 1e-100 Protein of unknown function (DUF1640) (.1) AT2G35090 69 / 2e-14 Protein of unknown function (DUF1640) (.1) AT2G35070 63 / 3e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G123700 [exp] 309 / 1e-107 AT2G16460 352 / 2e-124 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041812 [exp] 249 / 2e-83 AT2G16460 252 / 1e-84 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2) Lus10042073 [exp] 227 / 4e-74 AT2G16460 252 / 4e-84 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2) Lus10018079 [exp] 226 / 6e-74 AT2G16460 252 / 3e-84 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07798 [poplar] [flax] DUF1640 Protein of unknown function (DUF1640)
Representative CDS sequence Show only first row Show all	>Potri.007G016300.3 pacid=42766845 polypeptide=Potri.007G016300.3.p locus=Potri.007G016300 ID=Potri.007G016300.3.v4.1 annot-version=v4.1 ATGGCTGCTGCTGCTTCTGCTGCTTGTAGGCGTGTTGTGGGTTATCAATTTGGAAGCAATTCAGGAGGTATTGGTTTTGGTAGGGGAGGATCTGGTGCTG TTTCTCCTTCAAATTTGGGTTTGATTTCTCAAAATAGGAATATTTCTCAGCTTGTCAACTCTAATGGCAGGAGATTATTTCTTGTTGATACATTAGCCCT CGTTAGAAGATTGGAGTCGCAGGGTGTGCCTTTGAAGCAAGCTGAGGCGATAACAGCTGCTATAACTGGAGTTTTGAATGATAGCTTGGAGAATGTGTCT CATTCAGTTGTCTCAAAGGAAGAGATGCAGAAGAATTCATTGATTCAAGAAACCAGCTTGTCAAAATTCAAATCTGAAGTCCAAAGCTCGCAGGAACACC ATTTTTCTTTGTTGCAACATGAGACTGAAAAACTCCGGCATGATATCGAGAAGATGCGCAGTGAATTGAGGCATGAAATTGACAAGCTCAGTGCTGGTCA ACGGTTGGATCTGAATCTTGAAAGAGGGCGGATAAGGGAGGAGCTAGCAAACCAGAATGCTGAAACCACTAACCTCACTAACAAACTTGATGGCGAAATT CATGGTTTGAGGGCCCAATTGGAAGCAGGAAAATATGAAGTGATAAAGTATTGCCTGGGTACTCTTGTTTCCATCTCTGCTGTTGGTCTTGCCGCAGTCC GCATCTTGATGTAA
AA sequence Show only first row Show all	>Potri.007G016300.3 pacid=42766845 polypeptide=Potri.007G016300.3.p locus=Potri.007G016300 ID=Potri.007G016300.3.v4.1 annot-version=v4.1 MAAAASAACRRVVGYQFGSNSGGIGFGRGGSGAVSPSNLGLISQNRNISQLVNSNGRRLFLVDTLALVRRLESQGVPLKQAEAITAAITGVLNDSLENVS HSVVSKEEMQKNSLIQETSLSKFKSEVQSSQEHHFSLLQHETEKLRHDIEKMRSELRHEIDKLSAGQRLDLNLERGRIREELANQNAETTNLTNKLDGEI HGLRAQLEAGKYEVIKYCLGTLVSISAVGLAAVRILM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16460			Protein of unknown function (D...		Potri.007G016300 [exp]	0	1
AT5G32440			Ubiquitin system component Cue...		Potri.018G127200 [exp]	1.73	0.7232
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Potri.002G263200 [exp]	5.19	0.6918
AT3G03940			Protein kinase family protein ...		Potri.019G034500 [exp]	6.00	0.6495
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Potri.010G098300 [exp]	10.95	0.6418	A1.4
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Potri.005G110600 [exp]	16.61	0.6994
AT1G72880			Survival protein SurE-like pho...		Potri.001G196800 [exp]	20.78	0.6310
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.004G124000 [exp]	27.20	0.6336	ATHMG.2
AT5G25265			unknown protein		Potri.006G258800 [exp]	44.72	0.6208
AT3G12100			Cation efflux family protein (...		Potri.016G045200 [exp]	48.37	0.5883
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Potri.017G114000 [exp]	64.49	0.5155

Compare expression of checked genes

Potri.007G016300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.