Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CAld5H/F5H4,Pt-FAH1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36220 761 / 0 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT5G04330 636 / 0 Cytochrome P450 superfamily protein (.1) AT5G07990 334 / 3e-109 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G26310 333 / 5e-109 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26300 328 / 9e-107 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G48270 323 / 4e-105 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G26320 320 / 7e-104 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G48310 319 / 1e-103 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G48280 318 / 5e-103 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT5G57260 315 / 1e-101 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117500 [exp] 935 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.009G123600 [exp] 692 / 0 AT4G36220 672 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G084800 [exp] 378 / 2e-126 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G082900 [exp] 377 / 5e-126 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083500 [exp] 374 / 8e-125 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G085000 [exp] 375 / 1e-124 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 371 / 9e-124 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084700 [exp] 370 / 2e-123 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G083000 [exp] 369 / 5e-123 AT3G26330 368 / 8e-123 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025975 [exp] 757 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10014273 [exp] 756 / 0 AT4G36220 721 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10028361 [exp] 746 / 0 AT4G36220 725 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10041511 [exp] 705 / 0 AT4G36220 687 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10022303 [exp] 701 / 0 AT4G36220 680 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10041811 [exp] 697 / 0 AT4G36220 667 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10034300 [exp] 695 / 0 AT4G36220 668 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10012582 [exp] 603 / 0 AT4G36220 578 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10000326 [exp] 546 / 0 AT4G36220 523 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10034230 [exp] 363 / 5e-120 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.007G016400.1 pacid=42766190 polypeptide=Potri.007G016400.1.p locus=Potri.007G016400 ID=Potri.007G016400.1.v4.1 annot-version=v4.1 ATGGATTCTCTTGTCCAATCTTTGCAAGCTTCACCCATGTCTTTCTTCTTGATCGCTATCACTTCACTTTTCTTCTTAGGTCTACTCTCTCGCCTTCGCC GAAGATTGCCATATCCACCAGGGCCTAAAGGGTTGCCACTTGTAGGTAGCATGCACATGATGGACCAAATAACTCACCGTGGGTTAGCTAAACTAGCTAA GCAATATGGTGGGCTATTTCACATGCGTATGGGGTACTTGCATATGGTAACTGTTTCGTCTCCTGAAATAGCTCGCCAAGTTTTGCAAGTCCAGGATAAC ATTTTCTCCAACAGACCAGCCAACATAGCCATAAGGTACTTAACCTATGATCGTGCCGATATGGCCTTTGCCCACTATGGTCCTTTCTGGCGCCAGATGC GTAAGCTCTGCGTCATGAAGCTATTTAGCCGGAAAAGGGCTGAATCATGGGAGTCTGTGAGAGATGAGGTGGACTCAATGCTTAAGACAGTTGAAGCCAA TATAGGCAAGCCTGTGAATCTTGGAGAATTGATTTTTACGTTGACCATGAATATCACTTACAGAGCCGCTTTCGGGGCTAAAAATGAAGGACAGGATGAG TTCATCAAGATTTTGCAGGAGTTCTCTAAGCTTTTTGGAGCATTCAACATGTCTGATTTCATTCCCTGGCTAGGCTGGATTGACCCACAAGGGCTCAGCG CTAGACTTGTCAAGGCTCGCAAGGCTCTTGATAAATTCATCGACTCTATCATCGATGATCATATCCAAAAAAGAAAACAGAATAACTTCTCTGAAGATGC TGAAACCGATATGGTCGATGACATGCTAGCCTTTTATAGTGAAGAAGCAAGGAAAGTAGATGAATCAGATGATTTACAAAAAGCCATCAGCCTTACTAAA GACAACATCAAAGCCATAATCATGGATGTGATGTTTGGTGGGACAGAGACGGTGGCGTCGGCAATAGAGTGGGTCATGGCGGAGCTAATGAAGAGTCCAG AGGATCAAAAAAGAGTCCAGCAAGAGCTCGCAGACGTGGTGGGTTTAGAGCGGCGCGTGGAGGAAAGTGATATTGAGAAACTAACATTCTTGAAATGCGC CCTCAAAGAAACCTTAAGGATGCACCCACCAATCCCACTTCTCTTACATGAAACATCCGAAGATGCTGAGGTTGCTGGTTATTTCATTCCAAAGCAAACA AGGGTGATGATCAATGCTTATGCTATTGGGAGAGACAAGAATTCATGGGAAGATCCTGATGCTTTTAAGCCTTCAAGGTTTATGAAACCAGGGGTGCCTG ATTTTAAAGGGAATCACTTCGAATTTATTCCTTTCGGGTCTGGTCGGAGGTCTTGCCCCGGTATGCAGCTTGGGTTATACACACTTGATTTGGCTGTTGC TCACTTGCTTCATTGTTTTACATGGGAATTGCCTGATGGCATGAAACCAAGTGAACTTGACATGACTGATATGTTTGGGCTCACCGCGCCAAGAGCAACT CGACTCGTTGCCGTTCCGAGCAAGCGTGTGCTATGCCCTCTCTAA
AA sequence Show only first row Show all	>Potri.007G016400.1 pacid=42766190 polypeptide=Potri.007G016400.1.p locus=Potri.007G016400 ID=Potri.007G016400.1.v4.1 annot-version=v4.1 MDSLVQSLQASPMSFFLIAITSLFFLGLLSRLRRRLPYPPGPKGLPLVGSMHMMDQITHRGLAKLAKQYGGLFHMRMGYLHMVTVSSPEIARQVLQVQDN IFSNRPANIAIRYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWESVRDEVDSMLKTVEANIGKPVNLGELIFTLTMNITYRAAFGAKNEGQDE FIKILQEFSKLFGAFNMSDFIPWLGWIDPQGLSARLVKARKALDKFIDSIIDDHIQKRKQNNFSEDAETDMVDDMLAFYSEEARKVDESDDLQKAISLTK DNIKAIIMDVMFGGTETVASAIEWVMAELMKSPEDQKRVQQELADVVGLERRVEESDIEKLTFLKCALKETLRMHPPIPLLLHETSEDAEVAGYFIPKQT RVMINAYAIGRDKNSWEDPDAFKPSRFMKPGVPDFKGNHFEFIPFGSGRRSCPGMQLGLYTLDLAVAHLLHCFTWELPDGMKPSELDMTDMFGLTAPRAT RLVAVPSKRVLCPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G016400 [exp]	0	1	CAld5H/F5H4,Pt-FAH1.4
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.001G036900 [exp]	1.00	0.9661	Pt-4CL.3,Ptr4CL3
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.013G157900 [exp]	2.44	0.9435	C4H2,CYP73.2
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.005G117500 [exp]	3.00	0.9272	FAH1.3
AT1G17120		CAT8	cationic amino acid transporte...		Potri.001G378500 [exp]	3.60	0.9184	Pt-CAT8.3
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.004G007600 [exp]	3.74	0.9313
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.002G189200 [exp]	4.47	0.9325
AT5G18500			Protein kinase superfamily pro...		Potri.010G001600 [exp]	5.47	0.9251
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.019G038268 [exp]	6.00	0.9340
AT4G13930		SHM4	serine hydroxymethyltransferas...		Potri.001G320400 [exp]	6.48	0.9315
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Potri.005G134900 [exp]	7.21	0.8914	LBD36.2

Compare expression of checked genes

Potri.007G016400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.