Plant FIBer expression Database

Potri.007G016466 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G016466.1 pacid=42766047 polypeptide=Potri.007G016466.1.p locus=Potri.007G016466 ID=Potri.007G016466.1.v4.1 annot-version=v4.1
ATGCTCTGGGAGCTGCTCGTAGTTTGCAGATCGATTGTTATGTTGTTTCTTGCTCCCCTTTGCCGAAACTCTAGTTTTTATATATTCTTCTTATCCTTCC
ACATTTCTTACAATGCTCTCCATCGTCCTATAATGGTTAGGAGAGAGTTTATATGCTTATCCTCTCGGTTGAAGATCATCAATATAACTATTTTTGATTG
CCCATGGCCCATAAACCTCCCACTCGAACACATTAAAACCACAGCAAATCTTTCATTTATTGGGCTTGTAGACCTGTGTCAATTTTTAGGTACAATATCT
ACCTTCCTTCTTTTTTTGTGTGCGTCCTCCTCCCGCGTGGAAAGAAATCAATCGTGTATTTGA
AA sequence
>Potri.007G016466.1 pacid=42766047 polypeptide=Potri.007G016466.1.p locus=Potri.007G016466 ID=Potri.007G016466.1.v4.1 annot-version=v4.1
MLWELLVVCRSIVMLFLAPLCRNSSFYIFFLSFHISYNALHRPIMVRREFICLSSRLKIINITIFDCPWPINLPLEHIKTTANLSFIGLVDLCQFLGTIS
TFLLFLCASSSRVERNQSCI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.007G016466
[exp]
0 1
AT2G30080 ATZIP6, ZIP6 ZIP metal ion transporter fami... Potri.009G074100
[exp]
2.44 0.8374 ZIP6.2
AT3G09770 LOG2 LOSS OF GDU 2, RING/U-box supe... Potri.016G089000
[exp]
3.74 0.8585
AT3G26020 Protein phosphatase 2A regulat... Potri.008G180000
[exp]
8.94 0.8370
AT3G02065 P-loop containing nucleoside t... Potri.014G140100
[exp]
13.60 0.8029
AT2G45040 Matrixin family protein (.1) Potri.003G077400
[exp]
13.67 0.7788
AT1G22540 Major facilitator superfamily ... Potri.019G079551
[exp]
13.74 0.7923
AT2G39550 GGB, ATGGT-IB, ... GERANYLGERANYLTRANSFERASE-I BE... Potri.010G206001
[exp]
16.52 0.7855
AT3G11760 unknown protein Potri.008G015700
[exp]
18.70 0.7916
AT1G28110 SCPL45 serine carboxypeptidase-like 4... Potri.016G034600
[exp]
20.00 0.7727
Potri.001G092600
[exp]
20.39 0.7511

Potri.007G016466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.