Plant FIBer expression Database

Potri.007G016532 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G016532.1 pacid=42766180 polypeptide=Potri.007G016532.1.p locus=Potri.007G016532 ID=Potri.007G016532.1.v4.1 annot-version=v4.1
ATGGAGATTGCAAGAGAATTTGGAGCATTGTTGTTCCTTGCATTGGTGTTTCGCCCATTGGTGGTTCTCGGGCTAAATGATTTTGAGGAAAGAAACGGAG
TGGCTCATTTTAACACTACTAAAAATGATGTGCATTCAAGTGGAAGCCACAACGTTGAGGATGATATAAGAGAAGGAAGAACAAACTCAACTTATACAGA
TGCTTTAGTCGAACACAATAGTGATTTGAACAACGGTGGAAGAGGAGGAGGTGGTGGCGGTGGTGGTGGAGGAGGAGGAGGAGGTGGTGGTGGCAATGGT
GGTAATGGAAATGGAGGAGGTGGTGGTGGAAGTGGAGTCGGGAAAGGTGGTGATAGCGGTCATGGAAAAGAAATAGGTAAGCCACACCAAAGGAAAGGAG
GAAAGCCTAGCAGTGGCGGTCGAGGAGGCGGTGGCAATGGTGGTGGTAGAGGAGGAGGAGGAGGAGGAGGTCAAGGGGGAGGTTGGGGTTGGGGAGGAGG
AGGTGGTGGAGGGGGCAACCAAGGAGATTGTTTGCCATGGGGATGTGGTGGCCACCCAAGAAAATCAATTGGGGCAAGATCAGTTAGTCCTCCCTGA
AA sequence
>Potri.007G016532.1 pacid=42766180 polypeptide=Potri.007G016532.1.p locus=Potri.007G016532 ID=Potri.007G016532.1.v4.1 annot-version=v4.1
MEIAREFGALLFLALVFRPLVVLGLNDFEERNGVAHFNTTKNDVHSSGSHNVEDDIREGRTNSTYTDALVEHNSDLNNGGRGGGGGGGGGGGGGGGGGNG
GNGNGGGGGGSGVGKGGDSGHGKEIGKPHQRKGGKPSSGGRGGGGNGGGRGGGGGGGQGGGWGWGGGGGGGGNQGDCLPWGCGGHPRKSIGARSVSPP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.007G016532
[exp]
0 1
AT3G26040 HXXXD-type acyl-transferase fa... Potri.008G034100
[exp]
1.00 0.9918
AT5G19730 Pectin lyase-like superfamily ... Potri.014G117100
[exp]
1.73 0.9834
AT4G02290 ATGH9B13 glycosyl hydrolase 9B13 (.1) Potri.014G126900
[exp]
2.00 0.9872 Pt-PCEL20.2
AT1G29670 GDSL-like Lipase/Acylhydrolase... Potri.019G008300
[exp]
4.00 0.9819
AT1G69560 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb do... Potri.010G167500
[exp]
4.24 0.9804
AT1G31710 Copper amine oxidase family pr... Potri.010G089050
[exp]
5.29 0.9797
AT5G45670 GDSL-like Lipase/Acylhydrolase... Potri.006G166800
[exp]
6.00 0.9768
AT5G18020 SAUR-like auxin-responsive pro... Potri.009G126500
[exp]
8.06 0.9817
AT1G75580 SAUR-like auxin-responsive pro... Potri.005G237200
[exp]
9.16 0.9700 SAUR31
AT5G04370 NAMT1 S-adenosyl-L-methionine-depend... Potri.019G022200
[exp]
9.79 0.9576

Potri.007G016532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.