Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46330 286 / 6e-84 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G23400 268 / 3e-81 Leucine-rich repeat (LRR) family protein (.1) AT3G24240 276 / 2e-80 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 273 / 7e-79 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 268 / 7e-78 Leucine-rich receptor-like protein kinase family protein (.1) AT1G35710 267 / 3e-77 Protein kinase family protein with leucine-rich repeat domain (.1) AT4G08850 264 / 1e-76 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT2G26330 259 / 4e-75 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 259 / 1e-74 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G44700 258 / 6e-74 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117700 [exp] 1038 / 0 AT3G24240 240 / 1e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.010G040200 [exp] 412 / 3e-135 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.007G001000 [exp] 283 / 4e-87 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.019G129100 [exp] 290 / 2e-85 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.004G065400 [exp] 283 / 9e-83 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.015G123800 [exp] 275 / 1e-80 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.005G031700 [exp] 271 / 1e-80 AT5G20480 368 / 3e-113 EF-TU receptor (.1) Potri.019G120733 [exp] 275 / 9e-80 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 275 / 9e-80 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019036 [exp] 288 / 5e-85 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10005017 [exp] 276 / 1e-82 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10023323 [exp] 278 / 7e-81 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10008712 [exp] 265 / 5e-77 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 264 / 2e-76 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10038488 [exp] 260 / 1e-75 AT5G46330 726 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10033329 [exp] 260 / 5e-75 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023677 [exp] 260 / 7e-75 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10033384 [exp] 259 / 7e-75 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10028612 [exp] 260 / 8e-75 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.007G016700.4 pacid=42765012 polypeptide=Potri.007G016700.4.p locus=Potri.007G016700 ID=Potri.007G016700.4.v4.1 annot-version=v4.1 ATGGAGATTTCAATGCACCCCCAAACCTTCTCACTTCTGTTCTTTCTCATCTTCTCTACATTAGCCTCTTCTAAGGCATGCCACCCAGTTGATAAAGAAG CATTACTTGATTTCAAACACAAAATCACAGATGACCCATCAAAACTGTTGCATTCTTGGAGAGTTTCCTCTGATTGCTGCACTTCTTGGGAAGGTGTTGC TTGTGATGCCTCAGGCAGAGTTGTCAATGTATCTCGTCCTGGTCTTGCGTCAGACAATGACTTCATTGAGGACACATACATGTCAGGAACTTTATCTCCT TATTTGGGAAACTTGTCCAGTCTTCAAGTTTTAGACCTGAGTAATCTCAAGGACTTGAAGGGACCAATACCAGAAGAACTTGGCAAGTTGTCAAAGCTCA CACATCTCTTTCTTGATACAAACAAGCTCACTGGATCAATACCATTTACATTAAGGTACTTATCTCAGCTGGAAAAGATGTATCTTAGTGACAATTTTAT ATCTGGTATTGTTCCTCCATCTGTTATGAAATCCTGGACACATGTCTCTGAACTTGGTTTATCAGGAAATGCTATGTCGGGGCCAATTCCTCCAACAATT GGCAAGGTGGTTATGATAACTAAGCTTGATTTACATGGTAACAACTTTACTGGTAGAATTCCTACAGGCTTTGGCAATCTTAAGAATCTCAGATATCTTG ATCTATCTGAAAATCAGATAACTGGAAGCATCCCACAGTCCATTGGTGGACTTGCTGCATTGGAACTACTATATCTCAATCAAAATCAGCTCACAGGAAG GATACCATCTTCGATATCTGGACTTAGTTCTATGATATTCTGTCGTATATCAGAAAACAAGTTATCTGGCAGTTTACCACCATCAATTGGCCAGCTCTCA AAGATTCAAAGGCTAATCCTTGAGAATAACAAGCTCACTGGAAAACTACCAGCAACCATTGGTCATCTAACAGCTCTTACTGATATATTTTTCTCTAACA ACTATTTTACAGGAAAGATCCCTTCAAGTTTTGGAAATTTACTCAACCTTCAAACACTTGATTTATCAAGAAACCGACTCTCCGGCCAGCTTCCTCCTCA GCTAGCTAAGTTGAAGAGCTTACAGACTTTATATCTTTCATATAATCCGTTAGGACTTGTTAGAATACCAAACTGGTTCCAGGAATTAAGAGTCTTCCAG CTTATGTTGGCAAATACTGGGATTGAAGGGGAACTTCCTCACTGGCTATCTTCATCATCAATATCACAACTTGACTTGTCAGGAAACGCATTAACAGGAA AGCTGCCTTGGTGGATTGGTAACATTACTAGCCTTTCATTTCTCAACTTATCAAATAATGGATTTCACTCATCCATCCCAGTTGAATTCAAGAACCTTTC ACTTCTGATGGATCTTGATCTTCACTCCAACAAGTTCAGTGGCCACTTAAATGTAATATTCTCTAAAGAAGTCCAAGACCCACTAGGCCATTTTAACTCC ATTGATCTTTCCTACAATATGTTCACTGGTCCAATTGATGATGACATAGGAGAGAGACCAGCAATGTCTTCTATTAGTTCATTGGTTCTATCACACAACA CACTGGGAGGATCACTACCAAAGTCAATTGGGAAAATGAGAGAATTGCAGGTTTTGAAGCTAGTGAATACTGGGCTGTCTGGGATGATACCCGAGGAGCT TGGCGATGCCAAAGAGTTGTCCACAATTTTACTTTCAAGAAATAAGCTGACTGGTGCTATTCCAGAGATTGTTCTAAATCTGAAGGAGCTAAAGCAATTT GATGTGTCTAGTAACAGACTAAGAGGCAGGATTCCTCCTCACAAAGCCATAATTCCTGCGTCTGCATTCAAGAACAATCCTGGTTTGTGTGGAACTCCAC TTCCACCTTGCAAGCACTTCTAA
AA sequence Show only first row Show all	>Potri.007G016700.4 pacid=42765012 polypeptide=Potri.007G016700.4.p locus=Potri.007G016700 ID=Potri.007G016700.4.v4.1 annot-version=v4.1 MEISMHPQTFSLLFFLIFSTLASSKACHPVDKEALLDFKHKITDDPSKLLHSWRVSSDCCTSWEGVACDASGRVVNVSRPGLASDNDFIEDTYMSGTLSP YLGNLSSLQVLDLSNLKDLKGPIPEELGKLSKLTHLFLDTNKLTGSIPFTLRYLSQLEKMYLSDNFISGIVPPSVMKSWTHVSELGLSGNAMSGPIPPTI GKVVMITKLDLHGNNFTGRIPTGFGNLKNLRYLDLSENQITGSIPQSIGGLAALELLYLNQNQLTGRIPSSISGLSSMIFCRISENKLSGSLPPSIGQLS KIQRLILENNKLTGKLPATIGHLTALTDIFFSNNYFTGKIPSSFGNLLNLQTLDLSRNRLSGQLPPQLAKLKSLQTLYLSYNPLGLVRIPNWFQELRVFQ LMLANTGIEGELPHWLSSSSISQLDLSGNALTGKLPWWIGNITSLSFLNLSNNGFHSSIPVEFKNLSLLMDLDLHSNKFSGHLNVIFSKEVQDPLGHFNS IDLSYNMFTGPIDDDIGERPAMSSISSLVLSHNTLGGSLPKSIGKMRELQVLKLVNTGLSGMIPEELGDAKELSTILLSRNKLTGAIPEIVLNLKELKQF DVSSNRLRGRIPPHKAIIPASAFKNNPGLCGTPLPPCKHF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Potri.007G016700 [exp]	0	1
AT3G13040	GARP		myb-like HTH transcriptional r...		Potri.014G000700 [exp]	1.00	0.8507
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.012G100700 [exp]	9.00	0.7847
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Potri.016G043700 [exp]	12.04	0.8256
					Potri.001G379300 [exp]	12.12	0.8267
AT5G25580			unknown protein		Potri.018G035700 [exp]	22.22	0.6801
AT1G07080			Thioredoxin superfamily protei...		Potri.012G107600 [exp]	24.89	0.8261
AT1G70550			Protein of Unknown Function (D...		Potri.010G044300 [exp]	25.21	0.7260
AT5G59020			Protein of unknown function (D...		Potri.001G246200 [exp]	27.01	0.7301
AT1G09890			Rhamnogalacturonate lyase fami...		Potri.002G110000 [exp]	33.40	0.7782
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Potri.003G051300 [exp]	34.58	0.7735	Pt-PAP2.3

Compare expression of checked genes

Potri.007G016700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.