Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54350 206 / 1e-56 FHA EMB1967 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) AT1G75530 178 / 7e-48 FHA Forkhead-associated (FHA) domain-containing protein (.1) AT1G60700 164 / 5e-43 FHA SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117900 [exp] 1098 / 0 AT3G54350 208 / 5e-57 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.005G234300 [exp] 230 / 4e-64 AT3G54350 306 / 3e-92 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.002G028300 [exp] 218 / 9e-60 AT3G54350 333 / 2e-102 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028358 [exp] 445 / 2e-145 AT3G54350 211 / 2e-58 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10041808 [exp] 405 / 2e-130 AT3G54350 191 / 1e-51 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10033185 [exp] 237 / 2e-66 AT3G54350 292 / 4e-87 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10010629 [exp] 212 / 4e-57 AT3G54350 285 / 5e-83 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [poplar] [flax] SMAD-FHA PF00498 [poplar] [flax] FHA FHA domain CL0357 [poplar] [flax] PF13325 [poplar] [flax] MCRS_N N-terminal region of micro-spherule protein
Representative CDS sequence Show only first row Show all	>Potri.007G016900.3 pacid=42765305 polypeptide=Potri.007G016900.3.p locus=Potri.007G016900 ID=Potri.007G016900.3.v4.1 annot-version=v4.1 ATGGCAGCACTTTCTGCTACTGCCACTCCTATTCTTACTACCAACACTTCAATTCCTCCTTCGTGGATCCCCGAAGACGACCTCTTGTTAAAAAACGCTA TCGAGGCAGGTGCATCGTTGGAAGCCCTAGCGAAAGGAGCTGTGAGATTTTCGAGGAAATTTAGTGTGCGTGAATTGAGGGATCGGTGGCATTCTTTGCT GTATGATAATGAGGTATCCACCGAAGCATCTAGTAGAATGGTAGAGTTAGAACTTTCTAATTTTTCTTACACAAAAGTAAGTAGTAGTAGTAATGGCAAC AGTAAATTTGGTTTTGTTGTGAAAGAAAGTGATCCTGTTAAGAGAAAATTCGAATGTGTTAGGCAATTGTATTATGCAATGAGGAAGAAAATGCGGAAGC GTGGTGGTGGTTTTGGTTTTCTTGGTTCGCTGGATGGCGGTGGTTGTGAAGGGAATGGTGGGTTTGGAGAGGATGATCGAGTGCATTTTGGATTTTCTGG GGAGGATGAAGGTGGGGTGGGGGATGTGCGTTTCGAGAGGGAAAATGTGAGAAAGGATGTGCAGGATATTGGAGATGGGTTGGTTGAGTTACGAGATTCT GAGAGAGGTGAGGAAGCTGGGCCATGTGGTGTGCCGGAAAGAGATGTTTTGATTCAGGCGGAGTCGTCTCTGGTGACAAGGGTGCCGTTGTGGAAAACGA TGGAAGATGTTTCTGCGCCTGAAATGCCAGTTAGTGCGAGTGTTGAAGGTAAAGGTAATAGTGGAGAGGGAATGTTGGTAGACAATGATGTTGTCGATGG GAATAAAGTAAGTTTGGCAGGAGTGGATGTCAACCATTCAGGAGTAACTTTCCAAGAGGAACCTACTGTTGATGCACTTGATAGGTCAACTGCAATTTCA GAATCTGATTTTCCAGATATTTCAGACTCGCTCTTGAACTTTCCTAATGAGGATGCACCACTTTTTATGGATGTTGATGGGAAAGATGCGATAGATAAAT CTTGTTACGATAGTGTCACTACACTTTTGGTGAGTTCTCCTATTGATGTTCAGGGTGACGTGCCTAATGTTAAAGCTCCAGAGATATTAGCATCAGATAC AAGCCTTGGAATTCCTGATAGTGCATGCCCTGCAGAGTTAGAGGTTATTCCAGAGGAGTCGTATTCTGTTGGTGGCAATCAGGATAGTAATTTTGTGTTA GAAATGAGTGCGCCATCATCTACATCAGCATCAAATATTTTGTCTGCTGAAGAAAATGATGGAGAGATGGAGTGCGTTCTAAACATGGAAGACTTTGAGA TCCCATGCAATGATGATGTATTCCTAGCTAAAACATTTTCTTCTCCCAAAATAGAGCAAACTTCTAAGAAGACTCCCTACCTGCCTTCCTCGAGTGTTAA TCAAAAGGATTGCAAACAAGAGCTAATCTTGCTGAAGAAAGAGGAAAATCCTGCTCAATGTCTTACTTCTCCACGGATGGTTGGGCAGGCTATGTTGCCA GTATCCAGTCCAAGGCACCAACATGTTCTTTATGGAGCCAAATGTGACTCTCCTGCTTTGATGTCTAGATCAGTTATCACAACCCATGCAGACCCAATTC AGTGCAGAGAGGCCCCGGGAACTCCTACTCCTTCTACAGTTGGACTACTAAAGTCAGCGACATTACATGAAAATTTAAATTTCCCTGTAAAAGCTGTTTC AGTACCCTCAACATCAAATCAGGAAGAAACTGGTAGTGATGATGATGTTCCCTGCTTTTCAGACATTGAAGCCATGATACTTGAAATGGATCTATGCCCG GATGATTCAGATTCATTTATTAATCATGAGGTCTCAAGGTATCAGAATGAAGATGCTACGAGGACAATTATAAGGTTGGAACAGTGTGCTCGATCTTCTA TGCAAAGAGCCCTTGCATCTCAAGGAGCACTTGCTATCTTGTATGGGCGCCATTTGAAGCATTATATAAAGGACACCAAGGTTATGCTCGGCAGAGCAAC AGATGATATGGATGTCGATATTGACTTGAAAAGAGAAGGGCCTGCCAACAAAATATCAAGACGGCAGGCACTCATAACGATGGAAGGAGATGGTTCTTTC TTTTTAAAAAATCTTGGTAGGATTCCGATATTTTTGAACGGCAAAGAACTCATGACTGGACAGAGTATGGGTCTGAGGTCAAGTAGTTTGATTGAGATAA GGGAAATGGCATTTGTGTTTGAAGTGAATAACAAATCTGTGAGGCAGCATCTCGCGAATGTCACCAAAAACCACAAAGAAAACAATTTCAAATTTGAATG GTCAGAACAAGGGAATAACCACCGAGAAACTGATATCAAGTTTGAATGGTCTGAAGGGGTTCCGTGA
AA sequence Show only first row Show all	>Potri.007G016900.3 pacid=42765305 polypeptide=Potri.007G016900.3.p locus=Potri.007G016900 ID=Potri.007G016900.3.v4.1 annot-version=v4.1 MAALSATATPILTTNTSIPPSWIPEDDLLLKNAIEAGASLEALAKGAVRFSRKFSVRELRDRWHSLLYDNEVSTEASSRMVELELSNFSYTKVSSSSNGN SKFGFVVKESDPVKRKFECVRQLYYAMRKKMRKRGGGFGFLGSLDGGGCEGNGGFGEDDRVHFGFSGEDEGGVGDVRFERENVRKDVQDIGDGLVELRDS ERGEEAGPCGVPERDVLIQAESSLVTRVPLWKTMEDVSAPEMPVSASVEGKGNSGEGMLVDNDVVDGNKVSLAGVDVNHSGVTFQEEPTVDALDRSTAIS ESDFPDISDSLLNFPNEDAPLFMDVDGKDAIDKSCYDSVTTLLVSSPIDVQGDVPNVKAPEILASDTSLGIPDSACPAELEVIPEESYSVGGNQDSNFVL EMSAPSSTSASNILSAEENDGEMECVLNMEDFEIPCNDDVFLAKTFSSPKIEQTSKKTPYLPSSSVNQKDCKQELILLKKEENPAQCLTSPRMVGQAMLP VSSPRHQHVLYGAKCDSPALMSRSVITTHADPIQCREAPGTPTPSTVGLLKSATLHENLNFPVKAVSVPSTSNQEETGSDDDVPCFSDIEAMILEMDLCP DDSDSFINHEVSRYQNEDATRTIIRLEQCARSSMQRALASQGALAILYGRHLKHYIKDTKVMLGRATDDMDVDIDLKREGPANKISRRQALITMEGDGSF FLKNLGRIPIFLNGKELMTGQSMGLRSSSLIEIREMAFVFEVNNKSVRQHLANVTKNHKENNFKFEWSEQGNNHRETDIKFEWSEGVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.007G016900 [exp]	0	1
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G117900 [exp]	6.63	0.8111
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Potri.006G249700 [exp]	21.49	0.7357
AT5G23850			Arabidopsis thaliana protein o...		Potri.015G144400 [exp]	22.71	0.7267
AT1G03000		PEX6	peroxin 6 (.1)		Potri.014G133000 [exp]	23.74	0.7634
AT5G65550			UDP-Glycosyltransferase superf...		Potri.010G182650 [exp]	23.76	0.7340
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.010G228500 [exp]	27.20	0.6894
AT3G49730			Tetratricopeptide repeat (TPR)...		Potri.002G176100 [exp]	36.51	0.6934
AT5G41620			unknown protein		Potri.002G166600 [exp]	46.43	0.6990
AT5G57970			DNA glycosylase superfamily pr...		Potri.018G106900 [exp]	53.58	0.6914
AT5G41920	GRAS		GRAS family transcription fact...		Potri.006G021400 [exp]	55.99	0.6766

Compare expression of checked genes

Potri.007G016900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.